Search Results for "linux command" - Page 5
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Showing 2463 open source projects for "linux command"
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schur
Interactive Program For Calculating Properties Of Symmetric Functions
Schur is a standalone program for interactively calculating properties of Lie groups and symmetric functions. Schur has been designed to answer questions of relevance to a wide range of problems of interest to chemists, mathematicians, computer scientists,... -
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The continuous medial representation is a method for object representation and shape analysis. Hosted on Sourceforge are the source code for routines that fit medial models to anatomical objects.
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IDCS-unisim
Emulates a set of UniDrive motor controllers for IDCP
unisim emulates a set of UniDrive motor control devices for the Insertion Device control program IDCP. With unisim you can run and test the Insertion Device Control System on your Linux PC. -
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PYroMat
Thermodynamic properties in python
PYroMat brings the thermodynamic properties of nearly 1,000 species to Python users with only a few keystrokes. Entropy, enthalpy, specific heats, inverse functions, and more are available from ideal gases, their mixtures, and multi-phase steam. Accurate, fast, and tested; PYroMat is the open-source solution for students, researchers, design engineers, and tinkerers everywhere who need thermodynamic properties. -
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libTheSky
Fortran library to compute positions of celestial bodies
libTheSky is a Fortran library to compute positions of celestial bodies (Moon, planets, stars) and events (conjunctions, eclipses). It forms the core of the software that produces the Dutch popular-astronomy website http://hemel.waarnemen.com -
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ParDRe
Parallel tool to remove duplicate DNA reads
ParDRe is a parallel tool to remove duplicate reads. Duplicate reads can be seen as identical or nearly identical sequences with some mismatches. This tool will let the users to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset (e.g., assemblies, mappings, etc.). The tool is implemented with MPI in order to exploit the parallel capabilities of multicore clusters. It is faster than multithreaded counterparts (end of 2015) for the same... -
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COBOL copybook to XML converter
Converts cobol copybooks to Xml/Java objects
CB2XML (CopyBook to XML) is a COBOL CopyBook to XML converter written in Java and based on the SableCC parser generator. This project includes utilities to convert an XML instance file into its COBOL copybook equivalent string buffer and vice versa. Source is now available in GitHub: https://github.com/bmTas/cb2xml -
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miRge3
Comprehensive analysis of small RNA sequencing data
An update to Python package to perform comprehensive analysis of small RNA sequencing data, including miRNA annotation, A-to-I editing, novel miRNA detection, isomiR analysis, visualization through IGV, processing Unique Molecular Identifieres (UMI), tRF detection and producing interactive graphical output. miRge3.0 is developed in python v3.8 and is a recent update of our previous version miRge2.0. This build includes command line interface (CLI) and cross-platform Graphical User... -
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QUAST
Quality Assessment Tool for Genome Assemblies
QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. It is maintained by the Gurevich lab at HIPS (https://helmholtz-hips.de/en/hmsb). For the most up-to-date description, please visit http://quast.sf.net. Below are just some highlights. QUAST computes several well-known metrics, including contig accuracy, the number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and manual). A... -
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NCO netCDF Operators
Command-line operators for netCDF and HDF files
The netCDF Operators, or NCO, are a suite of file operators which facilitate manipulation and analysis of self-describing data stored in the (freely available) netCDF and HDF formats. Volunteers welcome! See homepage for details and download links. -
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QFT fork-yzhs
testbed for QFT and such
This is a fork of Colin Benner's Frobenius benchmarking. https://github.com/yzhs/frobenius-test Quadratic Frobenius primality Test (QFT) as devised by Grantham has two relatively expensive first steps. In other projects, techniques were examined that may reduce that expense and are tested here. -
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In addition to computing co-expression clusters, Maccu fishes potential co-expressed genes for a given bait set. All results can be further processed via graph-level operations so that we can compare graphs based on different reference data.
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DNP3 protocol Server Simulator download
Simulate DNP3 Outstation server using serial, tcp, udp communication
...Binary Input, Double-bit Binary Input, Binary Output, Counter Input, Analog Input, Analog output, Octect String, virtual terminal String. support CROB, analog output command with "select-before-operate" or "direct-execute" command execution modes Industry proven, tested with all leading test tools Interoperability : http://freyrscada.com/docs/FreyrSCADA-DNP-Driver-Object-Variation-Support.pdf Get a free DNP3 (IEEE 1815) Development Bundle In the Development Bundle, We included DNP3 Server & Client Simulator, Windows & Linux SDK. ... -
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ERmod
Approximate solvation free energy calculator
ERmod (Energy Representation Module) is a program to calculate the solvation free energy based on the energy representation method (J. Chem. Phys. 113, 6070 (2000)). The program allows users to calculate the solvation free energy to arbitrary solvents, including inhomogeneous systems, and can run in cooperation with state-of-art molecular simulation software, such as LAMMPS, GROMACS and/or AMBER. -
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NuzeBot
Finds interesting news headlines.
This is a bot to finds the news you want to see. It can be made to find the news that interests you and reject everything else. View on one page the most interesting headlines from many websites. -
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In addition to RPKM (Reads Per Kbp per Million reads) values, RACKJ computes read counts for exons and splicing events. In so doing, it is feasible to compare two samples and identify genes with most significant difference in exon(splicing)-level.
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A python-based system to diagnosis and make weather maps (wxmap) of numerical weather prediction models using the Grid Analysis and Display System (GrADS) from opengrads.org
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IEC 60870-5 101 Client Master Simulator
Simulate iec101 client Master supports all type ofASDU,monitor,command
v21,06.018 Complete Simulation of IEC 101 Client as per Protocol Standard including File transfer. Support Balanced and unbalanced modes. Add up to 50 Client node in the simulator. Every Client node will work independently. Send all type of commands, parameter activation, file transfer. Interoperability: http://www.freyrscada.com/docs/FreyrSCADA-IEC-60870-5-101-Client-Interoperability.pdf Download Evaluation Kit - IEC 60870-5-101 Development Bundle: In the Development... -
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pineTERM: Free In-Browser UART Terminal
Easy-to-use, powerful web/browser UART terminal, no installation req.
A modern, stand alone browser-based serial terminal for UART communication with microcontrollers, embedded devices, and IoT hardware. No installation required - just open in your browser and connect to your serial device. Just unpack the zip file into local folder and open index.html in Chrome/Edge/Opera. Works on Windows/Linux/MaOS -
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relax
Molecular dynamics by NMR data analysis
The software package 'relax' is designed for the study of molecular dynamics through the analysis of experimental NMR data. Organic molecules, proteins, RNA, DNA, sugars, and other biomolecules are all supported. It supports exponential curve fitting for the calculation of the R1 and R2 relaxation rates, calculation of the NOE, reduced spectral density mapping, the Lipari and Szabo model-free analysis, study of domain motions via the N-state model and frame order dynamics theories using... -
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ProbeMaker is a framework for design of sets of oligonucleotide probes. It allows the design of different types of probes made up of separate sequence elements. A Plug-in mechanism allows extension of the framework with new functionalities.
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evTools
Tools to analyse output from the stellar-evolution code ev/STARS/TWIN
The evTools package provides tools to manipulate and display output from the binary stellar-evolution code ev (also known as STARS and TWIN). -
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RefDB is a reference database and bibliography tool for SGML, XML, and LaTeX documents, sort of a Reference Manager or BibTeX for markup languages. It is portable and known to run on Linux, Free/NetBSD, OSX, Solaris, and Windows/Cygwin.
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IQcad
A 2D CAD application for civil engineering , built with Free Pascal
IQCad is a free 2D CAD application for civil engineering and tunnelling, built with Free Pascal/Lazarus for Windows and Linux. Features: 25+ entity types (Line, Polyline, Arc, Circle, Spline, Hatch, Text, Dimensions, Table, and more) AutoCAD-style command line with object snaps and grip editing Modify tools: Move, Copy, Rotate, Scale, Mirror, Offset, Trim, Extend, Chamfer, Fillet Layers, linetypes, blocks, and configurable styles Civil Engineering: TIN surfaces with contours and spot elevations Survey points with CSV import and point groups Tunnel section lines with deviation analysis Horizontal alignments with curves and spirals LandXML import/export File Formats: DXF (R12/R2000/R2018), LandXML, PDF, PNG, SVG,DWG ( using ODA converter or Librecad dwg reader) WMS server support Point Cloud import export. ...