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Optical trap control software. This project provides an example LabVIEW software program to perform data acquisition and feedback control of optical tweezers, especially for single-molecule biophysics experiments.
This program is able to simulate digital circuits on gate level. This code was written during my bachelor thesis. It is not near perfection, but it has potential. So if there's someone out there interested in making it better, feel free to do so.
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Program described in the paper: MUDE: A new approach for optimizing sensitivity in the target-decoy
search strategy for large-scale peptide/protein identification, 2010.
By Cerqueira, Fabio; Graber, Armin; Schwikowski, Benno; Baumgartner, Christian.
The Genomic Next-generation Universal MAPper (gnumap) is a program designed to accurately map sequence data obtained from next-generation sequencing machines (specifically that of Solexa/Illumina) back to a genome of any size.
Seems to be closely related to Cellular automaton, except this creates a complex pattern from a mathematical function you input. See website for examples/live applets. This program makes use of an old GPL version of the JEP equation parser.
Earnest is a A PHP-MYSQL AI EXPERT SYSTEM for creating powerful expert system easily. Its simple PHP API can also be called from JAVA, browsers or other software to perform GIS and other comparisons. Also has ability to create XML results.
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Python program for fitting rate constants to primarily kinetic data as 1st or 2nd order kinetics or autocatalysis. It also allows specific noise cancelling, data smoothing by fourrier transform, box averaging and flowing mean. For Python 2.6 or earlier.
This program generates customizable hyper-surfaces (multi-dimensional input and output) and samples data from them to be used further as benchmark for response surface modeling tasks or optimization algorithms.
MUMmerGPU is a high-throughput DNA sequence alignment program that runs on nVidia G80-class GPUs. It aligns sequences in parallel on the video card to accelerate the widely used serial CPU program MUMmer.
A library to process X-ray images from the Heimann imaging system. The XGray library has interfaces to C++ and Tcl and includes the graphical program XRayLab, which is written Tcl.
The HBLCFinder program is designed to identify literature records containing blood lead measurement data in abstracts. hblc_finder_012210.tar.gz md5sum 45c7955a14a215755d0821e9c062af70
HubbleView is a monitor calibration program that converts Yxy samples received from the Xrite Hubble to D65 and displays them on an RGB bar graph. HubbleView is helpful for setting white balance on broadcast monitors and projectors.
The purpose of this program is to teach a computer to classify plants via their leaves. You just need to input the image of a leaf(acquired from scanner or camera), then the computer can tell you what kind of plant it is.
Snap (snap-pari) is a computer program for studying arithmetic invariants of hyperbolic 3-manifolds. See: Computing arithmetic invariants of 3-manifolds by Coulson, Goodman, Hodgson and Neumann, Experimental Mathematics Vol.9 (2000) 1.
A program to help visualize the massive amounts of world temperature data available. It takes the world temperature records and plots them on a map so you can see the temperature moving through time and space around the world.
LIGR Assembler is a sequence assembly program. It was derived from TIGR Assembler and addresses some of TIGR Assembler's shortcomings. See the CHANGES file for details.