Search Results for "sql command line" - Page 47
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Showing 2657 open source projects for "sql command line"
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PHPTest
PHP code for creating online tests mainly for research purposes
A single PHP file allowing you to: - display an introduction text; - display a sequence of an arbitrary number of questions with videos; - collect the user's answers and store them in a file. No database needed. -
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Seqshell
A JAVA GUI for performing the function of Tophat and Cuffdiff
Combines the Tophat and Cuffdiff functions in one GUI interface. tophat and cuffdiff are required to be pre-installed in the system. By modifying the program, it can be used to execute any command line programs even R packages since R can also be run from commandlines. New functions: Batch processing function for Tophat. You can now execute as many mapping jobs as you want with tophat. This program will save the output into separate folders. An alert email will be sent to your email address when the job is done. (You will need to modify the source code to change the content to meet your special needs) Run-time information will be displayed in a JAVA output window. -
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Simple command-line tool to download/upload firmware to/from STM32 MCU with factory preprogrammed serial bootloader. Look <a href="http://openfacts2.berlios.de/wikien/index.php/BerliosProject:STM%20Flasher">wiki</a> for more info.
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Volterra-Wiener series Identification Toolbox. This tool lets the identification of nonlinear discrete causal systems that can be approximated with the Volterra-Wiener series. Please see NEW ADVANCE in Volterra series identification: https://sourceforge.net/projects/volterra20/?source=directory
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cnvHiTSeq
cnvHiTSeq is a set of tools for detecting CNVs using sequencing data.
cnvHiTSeq is a set of Java-based command-line tools for detecting Copy Number Variants (CNVs) using next-generation sequencing data. cnvHiTSeq uses standard BAM files as input. -
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Obeliks
Obeliks: Oblikoslovni označevalnik za slovenski jezik
Dolgoročni cilj projekta Obeliks je izdelava in nadgrajevanje najbolj natančnega statističnega označevalnika za slovenski jezik. Oblikoskladenjsko označevanje je proces pripisovanja oblikoslovnih (in deloma skladenjskih) lastnosti besedam v poljubnem besedilu. Tako označeno besedilo je predpogoj za delovanje večine aplikacij, ki temeljijo na analizi naravnega jezika. Označevanje slovenskih besedil je zelo težak problem, saj mora algoritem za označevanje pravilno izbirati med skoraj dva tisoč... -
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BreakDancer-0.0.1 is a Perl package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads.
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The ASN.1 Compiler
Go to github.com/vlm/asn1c for the latest version.
This ASN.1 compiler turns ASN.1 specifications into C code. The asn1c is shipped together with conformant BER/DER/XER/PER codecs. The X.509, GSM TAP3, MEGACO, RRC and LDAP encoding and decoding examples are part of the source code distribution. NOTE: THE asn1c PROJECT HAS LARGELY MOVED TO GITHUB: http://github.com/vlm/asn1c -
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Various tools for creating annotated parallel corpora including pre-trained tagging and parsing models for various languages, sentence alignment tools and word alignment tools. Uplug also includes a web-based interface for interactive sentence and word alignment and scripts for indexing and querying parallel corpora using the Corpus Work Bench CWB. Download 'uplug-main' first and then add other packages.
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GenoTan identifies inherited variation of microsatellite loci from short sequence reads using a discretized Gaussian mixture model combined with a rules-based approach.
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NaRIBaS
Unix-based preparation and analysis toolbox for molecular simulations
Unix-based preparation and analysis toolbox for Nanomaterials and Room Temperature Ionic Liquids in Bulk and Slab using bash scripts, Gromacs tools and Matlab functions. NaRIBaS provides a framework that decouples user input parameter and terminal based command lines. NaRIBaS does not replace a simulation software and specific analysis tools like Gromacs, but it allows iterative repetition of tasks while changing specific input parameter. The toolbox is to be understood as a scripting... -
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UM-OLSR is an OLSR (Optimized Link State Routing protocol) implementation for the ns2 network simulator.
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IRIS is an extensible reasoning engine for Datalog extended with function symbols, unsafe rules, negation, locally stratified or non-stratified programs, XML schema data types and a comprehensive and extensible set of built-in predicates.
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1/ WCA interprets a file containing the definitions of variables and expressions to be analysed, computes the worst case analysis, and prints the results. 2/ WCADB extends MathCAD to perform Monte-Carlo W.C.A. based on drifts taken from an external database.
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GEPETTO - Gene Prioritization in Java
GEPETTO (GEne Prioritization ExTended TOol)
GEPETTO (GEne PrioriTization ExTended TOol) is an original open-source framework, distributed under the LGPL license, for gene selection and prioritization on a desktop computer that ensures confidentiality of personal data. It takes advantage of the data integration capabilities in the SM2PH-Central Framework(KD4v,MSV3d,BIRD,..), combined with in-house developed gene prioritization methods. It currently incorporates six prioritization modules, based on gene sequence, protein-protein... -
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Command line / filter tool - Analyze, compute and transform numerical data tables of unlimited length
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WTMParse
Python script to parse Unix-like WTMP files
Python script that was originally intended for use in forensic examinations that parses WTMP files from Unix-like operating systems and generates a CSS-styled HTML report containing login terminal, username, log start date and login time/date in a table. Good for postmortem forensic examinations or as a way of getting "last" like information where you don't have the ability to boot the machine in question but can grab the wtmp. -
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Starch CLD fit
Least-squares fit of amylopectin chain-length distribution
This FORTRAN program package finds the parameters involved in amylopectin chain-length distribution (CLD) biosynthesis by fitting experimental CLD data to a model which incorporates the underlying starch biosynthesis. The amylopectin CLD biosynthesis model used by this program is explained in the article “A Parameterized Model of Amylopectin Synthesis provides key insights into the Synthesis of Granular Starch”, by Alex Chi Wu, Matthew K. Morell and Robert G. Gilbert. The downloadable... -
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Circonspect is a bioinformatic tool to produce contig spectra, useful for the estimating viral diversity in metagenomes. It uses an external assembly program and a bootstrap technique to automate the generation of contig spectra and cross-contig spectra.
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lpg_ptbr
The Linux Programmer's Guide em pt_BR
The Linux Programmer's Guide em português do Brasil -
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JGBParser
jgbparser, gbk parser, genbank parser, bioinformatics
We present an alternative library for development of bioinformatics Java applications. a Java implementation of JGBParser was built. It consists in a library, able to analyze text files in the GenBank Flatfile (GBF) format. -
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SPiM2Eclipse
Eclipse plugin for Stochastic Pi Machine
...A web application Visual SPiM, and a destkop application SPiM Player. Both simulation tools require to be run on a Windows platform. Fortunately Microsoft has also released a command line version for Linux and Mac OS based on OCAML however this version will only output a CSV file for the simulation results. SPiM2Eclipse provides a bridge for those running SPiM from the command-line by allowing simulations to be completed by a single click, displaying an embedded plot of the results. Features: -As an Eclipse plugin you have all of the powerful features of Eclipse available to you. ... -
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PolyBoRi is implemented as a C++ library for Polynomials over Boolean Rings, which provides high-level data types for Boolean polynomials. A python-interface yields extensible algorithms for computing Groebner bases over Boolean Rings.
