Showing 2463 open source projects for "linux command"

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  • 1
    This project no longer resides at sourceforge. The new home page is: http://muparser.beltoforion.de
    Downloads: 0 This Week
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  • 2
    I Language
    I is a cross-platform programming language designed towards efficiency during development and at runtime.
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  • 3

    TML - Text Mining Library for LSA & CMM

    TML is a Java Library for LSA and extracting Concept Maps from text

    TML has moved to http://www.villalon.cl/tml.html and the code to https://github.com/villalon/tml
    Downloads: 0 This Week
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  • 4
    popbam
    POPBAM is a tool to perform evolutionary or population-based analyses of next-generation sequencing data. POPBAM takes a BAM file as its input and can compute many widely used evolutionary genetics measures in sliding windows across a genome.
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  • 5
    Boxshade is a program for creating good looking printouts from multiple- aligned protein or DNA sequences.
    Downloads: 1 This Week
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  • 6

    cextools

    Command line helpers for Conexp files.

    Some small command line programs and a file parser for Concept Explorer (conexp) written in C++. Currently features include: Converters from concept explorer into PDF, PostScript, SVG and PovRay, a modified 3D Freese layout.
    Downloads: 0 This Week
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  • 7

    RASPnmr

    Protein NMR backbone resonance assignment

    RASP uses structure-based chemical shift predictions to solve the backbone resonance assignment problem in protein NMR spectroscopy. This enables rapid determination of highly accurate assignments on the basis of minimal experimental datasets, even for spectroscopically challenging proteins. RASP takes as input spin systems assembled on the basis of an arbitrary set of conventional triple-resonance NMR experiments. Uniquely, RASP is capable of extensive assignments even in the abscence of...
    Downloads: 0 This Week
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  • 8
    A simulation of Fisher's geometric model of adaptation modified to describe diploid species
    Downloads: 0 This Week
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  • 9

    psicode

    An open-source quantum chemistry program package

    PSI is an open-source program for computing molecular properties using high-accuracy, ab initio, quantum mechanical models.
    Downloads: 4 This Week
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  • 10
    CorpusSearch finds syntactic structures in a corpus of annotated sentence trees. It can be used as a research tool on a corpus, or as a development tool for building the corpus.
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    Downloads: 5 This Week
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  • 11

    abc-sde

    approximate Bayesian computation for stochastic differential equations

    A MATLAB toolbox for approximate Bayesian computation (ABC) in stochastic differential equation models. It performs approximate Bayesian computation for stochastic models having latent dynamics defined by stochastic differential equations (SDEs) and not limited to the "state-space" modelling framework. Both one- and multi-dimensional SDE systems are supported and partially observed systems are easily accommodated. Variance components for the "measurement error" affecting the...
    Downloads: 0 This Week
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  • 12
    First automated tool for classification of transposable elements in eukaryotic organisms.
    Downloads: 0 This Week
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  • 13

    confero

    Confero is an Integrated contrast and gene set platform

    Confero is an integrated contrast and gene set platform for computational analysis and biological interpretation of omics data.
    Downloads: 0 This Week
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  • 14
    islec

    islec

    ISL Solid-Liquid Equilibrium Calculator

    ISL Equilibrium Calculator,which process solid-liquid equilibrium calculation by using Harvie extended Pitzer's ion interaction electrolyte solution model and particle swarm optimization Gibbs free energy minimization (GEM). ISLEC is an efficient tool for solid-liquid equilibrium calculation, and can simulate the crystallization path of seawater and salt lake brines. ISLEC is suitable for related researches and process design.
    Downloads: 1 This Week
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  • 15
    DAWGPAWS
    DAWGPAWS is a suite of command line programs written in Perl that accelerates annotation of genes and transposable elements in plant genomes by automating the process of running annotation programs and facilitating combined evidence annotation curation.
    Downloads: 0 This Week
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  • 16

    nwbas2ecce

    nwbas2ecce converts nwchem basis set files to the ECCE format

    The basis sets included with ECCE have -- as far as I can tell -- not been updated for many years. In addition, many of the newer basis sets that come with nwchem aren't included, such as the def2- series. nwbas2ecce is a python script that aims to automate as much as possible of the conversion process of a nwchem basis set file into the files necessary for ECCE to included it in the basis set tool. The process isn't completely automatic, but I also believe that it shouldn't be to...
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  • 17

    gplot

    Gplot provides a convenient front-end for gnuplot

    Gplot provides a convenient front-end for gnuplot. It accepts a large set of options to generate a single plot of one or more sets of data (overlaid as necessary).
    Downloads: 0 This Week
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  • 18
    Physical modelling of water transport in plants
    Downloads: 0 This Week
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  • 19
    YARS - Yet Another Robot Simulator
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  • 20
    Command line utility to create graphs and plots for web, CGI, paper, slides. Create pie charts, bar graphs, scatterplots, and other kinds of graphic displays from your alphanumeric, date, time, or categorical data. Input data is in .csv or .txt. Output graphics in gif, postscript, eps, png, svg and others. Useful in dynamic web content systems and other unattended uses. Command line, batch mode. For full details see http://ploticus.sourceforge.net Dec 2016: A new compact python API...
    Downloads: 8 This Week
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  • 21
    GLPKMEX - a Matlab MEX interface for the GLPK library Note: GLPKMEX is not currently compatible with glpk-4.49, or later. please use with glpk 4.40 - 4.48.
    Downloads: 6 This Week
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  • 22

    JPacketGenerator

    UDP Packet Generator (Stream generator)

    Very basic UDP traffic generator. Works with a packet receiver to control the network status as Bandwidth, RTT, jitter, Loss % etc etc... Set Source Address, Destination address - Port Packet Size Stream Bandwidth And press start Command Line interface available java -jar JPacketGenerator.jar srcAddress srcPort dstAddress dstPort bitRate_bps All parameters are mandatory and with parameters the generator require no GUI or windows manager to work. If The project...
    Downloads: 0 This Week
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  • 23

    connect3d

    Reconstruct Water-Tight Triangulation from Point Cloud

    This software reconstructs water-tight triangulations from point clouds, interpolating the points. It approximates the triangle mesh which minimizes the sum of all triangles' longest edge. As a result, it can interpolate much more sparse sampling as state-of-the-art algorithms. Run-time is in practice linear to that of the Delaunay triangulation of the points. The software is designed as a command-line tool. It can also be used as a library. A plug-in for the Meshlab geometry software is...
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  • 24
    DetectiV is an R package for the analysis of pathogen detection microarrays
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  • 25

    MiniKakofonix

    Asterix UDP multicast recorder

    This program is capable of subscribing to an UDP multicast feed containing (live) radar data in Eurocontrol Asterix format. The received UDP frames are stored in a recording file. A new (raw) Asterix recording file can be created every x minutes. The previously recorded Asterix filename contains date and timestamp. This tool can be used to do continuous 24/7 Asterix multicast recordings.
    Downloads: 0 This Week
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