Search Results for "run 3" - Page 4
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Showing 133 open source projects for "run 3"
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SeqHunter2
a stand-alone bioinformatics software for querying genome sequences
SeqHunter2 is a stand-alone software with graphical user interface, running on Microsoft windows system. It is programmed with the following functions: 1) collect and manage local sequence databases; 2) run blast search by using a batch of sequences and with abundant output formats; 3) extract sequences by a set of IDs or coordinates; 4) generate sequences alignment; 5) edit sequence and translate nucleotide to proteins; 6) browse genome and search genes; 7) collect resource items and link... -
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virtualStapler
Large Script Workaround
designed to emulate a stapler placed on the 'n' key (yes, that's what i said...) you get this: --------------------------- Web Browser --------------------------- Stop running this script? A script on this page is causing your web browser to run slowly. If it continues to run, your computer might become unresponsive. --------------------------- Yes No --------------------------- which is the Computer's way of saying it's not fair it should be working at 2 a.m. if you... -
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Swift Sequence Alignment Program
GPU-based DNA sequence alignment program using Smith-Waterman
...&searchByKeyword=&submit=&select=+&sessionEvent=&sessionYear=&sessionFormat=#1303. To install and run Swift, please refer to the Wiki page: http://sourceforge.net/p/swiftseqaligner/wiki/Home/ If you need further help installing or running Swift, please contact Pankaj Gupta at pankaj.gupta@stjude.org. -
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Atlas2Cloud
Atlas2 Genome Analysis Pipeline on Amazon Web Services
... which would then run the pipeline from your computer. -
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Pontos
Pontos calculates distance matrices from DNA sequence alignments.
... to the farthest sequences from the ends). Ambiguities (things like R, Y, N, W, etc. in a DNA sequence) can be treated like: - consider ambiguities as always different; - consider ambiguity as partially different (e.g. R would be 0.5 different from A or G); - ignore ambiguities in each pairwise comparison; - remove all columns, globally, that show any ambiguity. Pontos was written in Linux, but should run in any system where Java works. Pontos is licensed under the GPL version 3. -
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ViennaMath
A symbolic math kernel in C++
ViennaMath provides a symbolic math kernel which can be used either for compile-time processing, or for run-time evaluation. Unlike other symbolic math implementations, ViennaMath aims at providing a fast math layer for use with numerical methods such as the finite element method (cf. ViennaFEM) -
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Jadabs is a dynamic lightweight container for small devices in a distributed environment. Many distributed infrastructures exists so fare like Jini, Jxta, Messaging Systems, etc. All of them lack so fare the possibility to be run on small devices.
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Celeste Cellular Automaton Simulator
A tiny and very simple cellular automata simulator. Abandoned, ignore.
Celeste is a tiny and simple Cellular Automata simulator written in Java. It is a command line application that writes an image of each simulation step. Celeste was designed to run Conway's Game of Life but other rulesets can be implemented as well. It is released under the extremely permissive WTFPL. -
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SQS is the Simple Queueing System that allows jobs to be run in sequence on one or more machine. The queues can be inspected, jobs can be deleted from queues even when running, and jobs can be held. The latest version as at the end of 2011 is sqs-3.1.
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The EU preDiCT VRE project provided a portlet environment where cardiac simulation experiments can be run and related publication and experimental data can be stored and queried.
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clinicalStudyTracker
Clinical study tracker tracks case study members through activities.
Developed at Medical Research Council UK to meet a common clinical trial need to track various types of clinical data. Users log dates of completed tasks against participant ID. Simple, useable, reduces lost data! Makes graphical progress reports. -
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General purpose discrete event simulation (DES) framework for the Python programming language. Khronos gathers ideas from other simulation software and tries to provide a simple and poweful toolset for simulation of discrete systems.
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Open Source Routing Machine computes shortest paths in a graph. It was designed to run well with map data from the Openstreetmap Project.
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was moved to http://sourceforge.net/projects/cloudflu
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*** There is now an active effort to include a QT-only (no KDE) based IDE for Octave that is part of the main Octave source code. I recommend that you build and test that version of an IDE, as it will be the most supported option going forward. *** The octavede is a development environment for the Octave mathematical software package. Octave normally is run in a terminal. Octavede provides an GTK/X11 application that provides functionality similar to other mathematical software packages.
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Ex-Crawler is divided into 3 subprojects (Crawler Daemon, distributed gui Client, (web) search engine) which together provide a flexible and powerful search engine supporting distributed computing. More informations: http://ex-crawler.sourceforge.net
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With the "xix" library, GATE functionality is available in XQuery (via an MXQuery extension). OpenCalais invocation is supported, too. -- Source code at http://sgv-jenkins-01.ethz.ch/job/xixlib/ws/-- "Show project details" for instruction
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This is a small program to show impedances in a Smith Chart. The chart is drawn (it is not an image), so it can be redimensioned without pixeling. As it's done with Qt 4, it should run in multiple platforms.
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HaxHexEditor is a file search system which search into multiple files (batch) with multiple definable searchstrings. The searchstrings can be specified by multiple wildcards. The search results will be exported in the HexWorkshop .HBK format
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The CoreBots library is a set of components for robots. The library adresses the command and control layer, and the localization and mapping problem. It is intended to run on the CoreBots at Ecole des Mines and/or on the WifiBots.
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A logging shell that can log commands from a shell. Designed to act as an automated lab-book for people that conduct experiments in their standard shell environments. Users can log and re-run experiments with little/no manual effort or interference.
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GêBR is an environment to seismic processing based on open-source technologies, designed to easily assemble and run processing flows.
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qpeGPS is a program for displaying a moving map centered at the position read from a GPS device. It's designed to run on a PDA with Qt/embedded (qtopia).
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This is an electrochemical battery model designed to run on the Playstation 3. The model is solved using a direct banded solver at each Newton step.