Showing 449 open source projects for "console command"

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  • 1
    CSV-Sanitizer

    CSV-Sanitizer

    Allows the user to automatically create non-sensitive, sanitized CSVs

    This project will allow the user to create non-sensitive, sanitized CSVs automatically, given any CSVs present. Its purpose? Create an easy way for people to share tasks or code that rely on sensitive CSVs, without exposing sensitive data. This project is conducted in Python3. Please see the Readme for more information :)
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  • 2
    Surface development.
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  • 3

    CUDALucas

    A program that uses CUDA to accelerate the Lucas Lehmer test.

    CUDALucas is a program implementing the Lucas-Lehmer primality test for Mersenne numbers using the Fast Fourier Transform implemented by nVidia's cuFFT library. You need a CUDA-capable nVidia card with compute compatibility >= 1.3 up to CUDA 6.5, 2.x up to 7.0 and 3.x for >=CUDA 8.0 . The program is run from the command line, however it can be configured without using a terminal. See the Wiki for more details. README for new users available at the Files/Downloads page.
    Downloads: 2 This Week
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  • 4
    CutePy

    CutePy

    Lightweight Qt-based Python console with variable explorer and history

    CutePy is a lightweight Qt-based Python 3 console with variable explorer, command history, syntax highlighting and customizable startup script. Originally it was developed for simple scientific calculations as a replacement for e.g. Windows calculator or Python IDLE. Therefore its main aim is to start fast and provide more comfortable dealing with variables based on the Python language.
    Downloads: 1 This Week
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  • 5
    CompleXChange

    CompleXChange

    differential analysis of combinatorial protein complexes

    The increasing wealth of transcriptomic data and current computational tools enable to infer how protein interactomes and complexomes may be assembled in specific samples. With CompleXChange this information can be exploited to conduct differential analyses of the dynamic protein complexome in a quantitative manner. The corresponding publication can be found on https://doi.org/10.1186/s12859-019-2852-z.
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  • 6
    C++ BigInt class

    C++ BigInt class

    C++ BigInt class enables to work with arbitrary precision integers

    C++ BigInt class that enables the user to work with arbitrary precision integers. Latest Version: 10.3 (2019-03-06)
    Downloads: 1 This Week
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  • 7

    MarDRe

    MapReduce-based tool to remove duplicate DNA reads

    MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems....
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  • 8

    HSRA

    Hadoop spliced read aligner for RNA-seq data

    HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a...
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  • 9
    FastFlow: programming multi-core

    FastFlow: programming multi-core

    Pattern-based multi/many-core parallel programming framework

    FastFlow is a C/C++ programming framework supporting the development of pattern-based parallel programs on multi/many-core, GPUs and distributed platforms. FastFlow run-time is built upon non-blocking threads and lock-free queues. Thanks to its very efficient CAS-free communication/synchronization support (e.g. few clock cycles core-to-core latency), FastFlow effectively supports the exploitation of fine grain parallelism, e.g. parallel codes managing very high frequency streams on...
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    Downloads: 1 This Week
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  • 10
    Finite Transform Library

    Finite Transform Library

    A Library is for Finite Transforms

    The Library is for Finite Transforms such as the Number Theoretic Transform (NTT) and Finite Radon Transform (FRT). Current modules include NTTW for NTTs with high resolution (microsecond) timing, basic array and imaging. The transforms are optimised for performance.
    Downloads: 0 This Week
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  • 11

    ParBiBit

    Parallel tool to search biclusters on binary datasets

    ParBiBit is a parallel tool to accelerate the search of biclusters on binary datasets, especially useful for gene expression data. This tool receives as input the expression values of n genes and m samples in a file with ARFF extension and returns a file with the biclustering information.
    Downloads: 0 This Week
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  • 12
    Mavscript

    Mavscript

    Calculations in a text document

    Mavscript allows the user to do calculations in a text document. Plain text, LaTeX and OpenOffice Writer files (.odt) are supported. The calculation is done by the algebra system Yacas (default), Jasymca or by the Java interpreter BeanShell.
    Downloads: 2 This Week
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  • 13
    scnu

    scnu

    Fortran codes for SCNURS method - Side Cut Non-Uniform Residual Stress

    SCNURS - Side Cut Non-Uniform Residual Stress measurement method for plates, - is a destructive RS measurement method developed in Moscow, Russia and later in Bristol, UK. The method is specifically designed for the measurement of highly non-uniform RS fields, including discontinuities, in plates. This project collects all codes which implement forward and inverse solution to the RS problem. The codes are in modern Fortran with OpenMP. The codes are distributed under 2-clause BSD...
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  • 14

    Presage

    the intelligent predictive text entry platform

    Presage (formerly Soothsayer) is an intelligent predictive text entry system. Presage generates predictions by modelling natural language as a combination of redundant information sources. Presage computes probabilities for words which are most likely to be entered next by merging predictions generated by the different predictive algorithms. Presage's modular and extensible architecture allows its language model to be extended and customized to utilize statistical, syntactic, and semantic...
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    Downloads: 190 This Week
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  • 15
    scriptLattes is an open-source system to create academic reports of groups based on curricula vitae of the Brazilian Lattes Database.
    Downloads: 2 This Week
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  • 16

    MPICorMat

    Parallel tool to construct correlation similarity matrices

    MPICorMat is a parallel tool to construct correlation similarity matrices as part of the procedure to generate gene co-expression networks. This tool takes as input a matrix with the expression values (a float value) for different genes observed from several samples. It is a parallelization of the first module of the RMTGenNet tool (https://github.com/spficklin/RMTGeneNet). RMTGeneNet users can exchange this CCM module by MPICorMat, benefit from its fast computation to generate the...
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  • 17
    PF_HP

    PF_HP

    Prediction of proteinfolding in 2D HP model

    Even in the simplified two dimensional HP-model (hydrophob/polar) the prediction of proteinfolding is NP complete. We implement a brute force algorithm with serial and parallel execution to solve short inputs of HP sequences (0-1 bitstrings). Selbst im vereinfachten zweidimensionalen HP-Modell (hydrophob/polar) ist die Proteinfaltung bereits NP-vollständig. Hier implementieren wir einen brute-force Algorithmus zur Lösung kurzer Eingabesequenzen (0-1-Bitstrings) für die...
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  • 18

    CIF2Cell

    Generating cells for electronic structure calculations from CIF files

    CIF2Cell is a tool to generate the geometrical setup for various electronic structure codes from a CIF (Crystallographic Information Framework) file. The program currently supports output for a number of popular electronic structure programs, including ABINIT, ASE, CASTEP, CP2K, CPMD, CRYSTAL09, Elk, EMTO, Exciting, Fleur, FHI-aims, Hutsepot, MOPAC, Quantum Espresso, RSPt, Siesta, SPR-KKR, VASP. Also exports some related formats like .coo, .cfg and .xyz-files. The program has been published...
    Downloads: 10 This Week
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  • 19
    GILIB

    GILIB

    GILIB Large Integer Arithmetic Library

    A large integer arithmetic library written in plain C.
    Downloads: 0 This Week
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  • 20
    SCRAM

    SCRAM

    Probabilistic Risk Assessment Tool

    SCRAM is a free and open source probabilistic risk analysis tool. The tool is under development to include fault tree, event tree, common cause, and other standard analyses.
    Downloads: 10 This Week
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  • 21
    Open3DALIGN
    An open-source software aimed at unsupervised molecular alignment
    Downloads: 6 This Week
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  • 22
    Open3DQSAR
    Open3DQSAR is a free, open-source tool written in C aimed at pharmacophore exploration by high-throughput chemometric analysis of molecular interaction fields (MIFs).
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    Downloads: 6 This Week
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  • 23
    SPar: Stream Parallelism in Multi-Cores

    SPar: Stream Parallelism in Multi-Cores

    An Embedded C++ Domain-Specific Language

    SPar is an internal C++ Domain-Specific Language (DSL) suitable to model and implement classical stream parallel patterns. The DSL uses standard C++ attributes to introduce annotations tagging the notable components of stream parallel applications: stream sources and stream processing stages. Latest version can be downloaded from the SVN using the following command: svn checkout svn://svn.code.sf.net/p/spar-dsl-compiler/svn/ spar
    Downloads: 0 This Week
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  • 24
    qucs2EQ

    qucs2EQ

    Convert Qucs Prv1 data to Audacity EQ curve xml

    Convert from Qucs Pr1.v dataset to Audacity equalization curve xml. Tested with Qucs Dataset 0.0.18 and Audacity 2.0.3
    Downloads: 0 This Week
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  • 25
    Open3DGRID
    An open-source software aimed at high-throughput generation of molecular interaction fields (MIFs)
    Downloads: 0 This Week
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