The Genomic Diversity and Phenotype Data Model (GDPDM) captures molecular and phenotypic diversity data. MySQL databases are used to implement the schema. This project develops software tools (written in Java, Perl, etc.) associated with this model.
The Microdata Management Toolkit is a collection of tools for documenting, disseminating and preserving survey and census microdata The project is sponsored by the International Household Survey Network with financial support from the World Bank.
Triple-A (Automatic Analysis with Automata) is a full-featured library for (finite) automata written in Java with two powerful analysis tools (dealing with LTL model checking and Presburger arithmetics) and a graphical user interface built around it.
The Distributed Genetic Programming Framework is a scalable Java genetic programming environment. It comes with an optional specialization for evolving assembler-syntax algorithms. The evolution can be performed in parallel in any computer network.
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The Word Vector Tool is a simple but flexible Javalibrary to create word vector representations of text documents. Word vectors can be used for various text processing tasks, as text classification, text clustering or information retrieval.
The Simple Interface for Global Optimization Algorithms allows the specification of arbitrary search/optimization problems, solving of these problems, and the specification and implementation of optimization algorithms like evolutionary algorithms.
Dimenso is a library of numeric types for .Net and Java, that obey dimensional analysis and permit calculations with physical quantities. Due to the lack of C++ - like templates with numeric arguments, code generation is employed using Python.
The Evolutionary Environment (EvENet) provides a P2P Network for guiding the evolution of Software Services and Service Compositions over time. This evolution is based on knowledge sharing and optimised using GA and Agent Systems. It is part of the DBE.
SOMMS is an analysis program for mass spectra intended for bio-informatics research. Its goal is to relate theoretical spectra with raw data. A previous version, accompanying an article published in Rapid Comm. in Mass Spectrometry, was written in Perl.
JMatrixCalc is a Java package used for matrix calculations. It's aim is to make developing many scientific (and non-scientific as well) project much easier and quicker. These projects include: educational software, statistics and many others.
InterMap is an Internet mapping application that allows the user to combine interactive maps from distributed Internet Map Servers in a browser. InterMap supports OpenGIS WMS and ESRI-ArcIMS and can be fully integrated with the GeoNetwork Metadata portal
Non-blocking C++ (GCC) CMUCam2+ & CMUCam Turret control library.
Interfaces using USB to camera.
Currently controls tilt, pan and frame capture. Easily exhanced/expanded for other functions.
Set of Ant filters that can be used to gather statistics from files or resources. It is mainly used for log files analysis. It allows to: - count inputs - count occurrences of each input - calculate average, max and min values of floats in input
PARs is a bioinformatics tool for the analysis of cis-regulatory DNA sequences. Composed of two parts: a suite of sequence analysis algorithms for predicting cis-binding sites in DNA sequences and a GUI for visualisation and exploration of the results.
Bitnets instantiates and operates on graphs and subgraphs of large complex networks, such as kinship networks. Bitnets consists mainly of a javalibrary, a number of use examples and an interactive interpreted language interface.
Crawl-By-Example runs a crawl, which classifies the processed pages by subjects and finds the best pages according to examples provided by the operator. Crawl-By-Example is a plugin to the Heritrix crawler, and was done as a part of GSoC06 program.
A full math Java class library containing complex functions and algorithms such as cubic-spline interpolation, least squares, matrix computations. Eventually to make a web based interface to the library using JSP.