Showing 1253 open source projects for "https"

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  • 1
    This is one of my simple aplications. It is a quadratic equations calculator made in C++. I hope it will be usefull for you. It would be helpful if you could donate a small amount of money. PayPal: https://www.paypal.me/Banderblade
    Downloads: 0 This Week
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  • 2
    ...The program works with files in PDB format, but it also can read/generate GROMACS compatible formats such as XTC. The same project can be compiled as a GROMACS tool or as a standalone version. Installation instructions are provided in the INSTALL file of the project and in https://sourceforge.net/p/trjcavity/wiki/Home/#ffad If you need support using this tool (or report bugs), please post it in the discussion forum. Remarks: v2 runs in parallel and supports GROMACS v5.1+ series. If you want to continue on using GROMACS v4.x, please use trj_cavity_v1.1.
    Downloads: 4 This Week
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  • 3
    geodetic-basic-eqn-mathematica

    geodetic-basic-eqn-mathematica

    geocentric <> geodetic <> XYZ basic equations

    ...shows that using (new) geometry observation, Heiskanen and Moritz or Ferrari equations were not necessary as the problem is not inheirently recursive as they suggested. (see article) *gleened from many onlne sources. file geodetic-geodesic is same, improperly named) (for historic reasons files are also in https://sourceforge.net/projects/periodictablemm/)
    Downloads: 0 This Week
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  • 4
    MeCFES

    MeCFES

    Myoelectrically Controlled Functional Electrical Stimulation

    ...At the same time the muscle can be electrically stimulated to contract. Combining these two principles the muscle can directly boost itself to obtain a greater amount of contraction. The project wiki is at: https://github.com/ThorsenRune/MeCFES
    Downloads: 0 This Week
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    GNomEx

    GNomEx

    A Genomic LIMS and Data Repository

    Our source code is now on GitHub: https://github.com/hci-gnomex/gnomex. Please refer to GitHub for the latest code. GNomEx is Genomic LIMS and Data Repository. It holds annotated experiments and downstream analysis and serves data tracks to popular genome browsers such as IGB, IGV, and UCSC genome browser. The LIMS handles all aspects of the experiment from order through results delivery.
    Downloads: 0 This Week
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  • 6
    tGlue

    tGlue

    Glue Libraries for Users as an Environment

    A platform-independent environment to glue developed libraries (such as different quantum-chemistry libraries) together for research, education and further development. Git repository: https://gitlab.com/groups/tglue
    Downloads: 0 This Week
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  • 7

    Asterix

    Asterix is command line parser and Wireshark plugin for ASTERIX

    ...ASTERIX defines the structure of the data to be exchanged over a communication medium, from the encoding of every bit of information up to the organisation of the data within a block of data - without any loss of information during the whole process. More about ASTERIX protocol you can find here: http://www.eurocontrol.int/services/asterix Source code is available at: https://github.com/CroatiaControlLtd/asterix
    Downloads: 0 This Week
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  • 8
    MF-OWHM | MODFLOW OWHM

    MF-OWHM | MODFLOW OWHM

    Simulation, analysis, and management of the movement of water

    This page is kept for those that want to use the legacy v1 version. For current download, source, and information please go to: https://code.usgs.gov/modflow/mf-owhm ----------------------------------------------------------------------------------------------------------- The One-Water Hydrologic Flow Model (MODFLOW-OWHM, One-Water) is an integrated hydrologic flow (IHM) model that is an enhanced fusion of multiple MODFLOW (MF) versions. While maintaining compatibility with existing MF versions, MF-OWHM includes: linkages for coupled heads, flows, and deformation; facilitation of self-updating models, additional observation and parameter options for higher-order calibrations; and redesigned code for faster simulations. ...
    Downloads: 2 This Week
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  • 9
    ...It simplifies the analysis of macromolecular structures, protein complexes, and molecular dynamics trajectories and offers a platform for the rapid integration of external programs. PLEASE NOTE: The Biskit source code as well as any later releases are now hosted on https://github.com/graik/biskit The sourceforge repo is only kept here for reference.
    Downloads: 0 This Week
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  • 10

    PingPongPro

    Find ping-pong signatures like a pro

    IMPORTANT NOTE: This project has been migrated to GitHub and is no longer maintained here. Please refer to: https://github.com/suhrig/pingpongpro Piwi-interacting RNAs (piRNAs) are a class of small non-coding RNAs, predominantly active in the germ line. There, they limit the detrimental effect of transposons on the genome. They do so by forming a complex with Piwi proteins. The complex binds and then cleaves mRNA molecules of active transposons.
    Downloads: 1 This Week
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  • 11

    jvqa

    Video Quality Assessment in Java

    jvqa 1.0-alpha-8 March 3, 2015 Video Quality Assessment in Java. Built upon Java Native Access for Avisynth - jnavi (https://sourceforge.net/projects/jnavi). Based on the Fast Structural Similarity index proposed by Chen and Bovik: http://live.ece.utexas.edu/publications/2011/chen_rtip_2011.pdf Implements the original, variance-based SSIM, Multi-Scale SSIM, Fast SSIM, 2, 3 and 4-Component Weighted SSIM, and Gradient Magnitude Similarity Deviation.
    Downloads: 0 This Week
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  • 12

    minepy

    Maximal Information-based Nonparametric Exploration

    The minepy homepage has moved to http://minepy.readthedocs.io. The download page is now at https://github.com/minepy/minepy/releases.
    Downloads: 0 This Week
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  • 13

    texrex

    Web corpus creation software (moved to GitHub)

    This project has moved to GitHub: https://github.com/rsling/texrex https://github.com/rsling/cow
    Downloads: 0 This Week
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  • 14
    orbkit (Moved to Github)

    orbkit (Moved to Github)

    A Modular Python Toolbox for Cross-Platform Post-Processing of Quantum

    PLEASE NOTE ORBKIT HAS BEEN MOVED TO https://github.com/orbkit/orbkit orbkit is a parallel Python program package for post-processing wave function data extracted from output files of MOLPRO (Molden File Format), TURBOMOLE (AOMix file format), GAMESS-US, PROAIMS/AIMPAC (wfn/wfx file format), and Gaussian (Output File and Formatted Checkpoint File) output files. Futhermore, an interface to cclib, a parser for quantum chemical logfiles, is provided.
    Downloads: 0 This Week
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  • 15
    finFoil is an application to help amateur surfboard fin makers foil their fins properly. All downloads are moved to https://finfoil.io Check out the homepage for the latest news and tutorials: https://finfoil.io hrobeers
    Downloads: 0 This Week
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  • 16
    RDKit

    RDKit

    Open-Source Cheminformatics and Machine Learning

    A collection of cheminformatics and machine-learning software written in C++ and Python. NOTE: the RDKit source code and downloads are now in github: https://github.com/rdkit/rdkit The core algorithms and data structures are written in C++. Wrappers are provided to use the toolkit from either Python or Java. Additionally, the RDKit distribution includes a PostgreSQL-based cartridge that allows molecules to be stored in relational database and retrieved via substructure and similarity searches.
    Downloads: 5 This Week
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  • 17

    ViennaTS

    The Vienna Topography Simulator

    ...The model support includes but is not limited to silicon etching in SF6/O2 and HBr/O2 plasmas, silicon dioxide etching in CF4 plasma, anisotropic wet etching of silicon, CFx polymer deposition on silicon, as well as several adaptable deposition models. ViennaTS is currently in a prototype state; the development is done on GitHub: https://github.com/viennats/viennats-dev
    Downloads: 0 This Week
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  • 18

    Lab Inventory

    Rediscover the Simplicity www.atgclabs.com

    Request new Lab Inventory feature or module and receive a free Single User version with new feature. Help us to improve Lab Inventory. We want to hear your feedback! https://www.atgclabs.com/products/li The Lab Inventory System is an innovative, easy to learn solution for research laboratories. You can quickly and easily upload your existing Excel based inventory and get started in minutes, manage laboratory inventory, place orders and keep track of them in one place. Lab Inventory can provide you with the advanced functionality you require enabling you to regain control of your stuff. ...
    Downloads: 2 This Week
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  • 19
    ProtPOS

    ProtPOS

    Prediction of PROTtein Preferred Orientation on a Surface

    ...ProtPOS is implemented in Python, making use of the PyMOL library for generating protein conformations and calling GROMACS externally to calculate protein-surface interaction energies. https://cbbio.online/software/protpos/
    Downloads: 0 This Week
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  • 20

    Science & Engineering Inventory

    Rediscover the Simplicity http://www.atgclabs.com/

    Request new Lab Inventory feature or module and receive a free Single User version with new feature. Help us to improve Lab Inventory. We want to hear your feedback! https://www.atgclabs.com/products/li The Lab Inventory System is an innovative, easy to learn full-featured solution for research laboratories. You can quickly and easily upload your existing Excel based inventory and get started in minutes, manage laboratory inventory, place orders and keep track of them in one place. Lab Inventory can provide you with the advanced functionality you require enabling you to regain control of your stuff. ...
    Downloads: 0 This Week
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  • 21
    ImagingBook

    ImagingBook

    Java source code for image processing books by Burger & Burge

    NOTE: The source repository for this project has been moved to a NEW LOCATION: ************************************************************************************ https://github.com/imagingbook/imagingbook-public ************************************************************************************
    Downloads: 0 This Week
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  • 22
    ShuffleFastaSeq

    ShuffleFastaSeq

    This application can be used to shuffle sequences in FASTA format.

    ShuffleFastaSeq is a Windows form application, written in C#, to shuffle FASTA-formatted sequences. The random permutation is obtained using a simple variation of the Fisher-Yates alghorithm implemented by Durstenfeld (https://en.wikipedia.org/wiki/Fisher%E2%80%93Yates_shuffle) ( Knuth DE. The art of computer programming: seminumerical algorithms. 3rd ed. Boston: Addison-Wesley; 1997). The input file contains one or more sequences in FASTA format. The number of shufflings (n) for each sequence can be set; by default n is 100. The output file contains n shuffled copies in FASTA format for each input sequence. ...
    Downloads: 1 This Week
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  • 23

    Eldamo

    Lexicon and data model for Elvish languages

    A lexicon of Tolkien's Elvish languages, backed by an XML data model of the lexicon's contents. This project has been migrated to Github: https://github.com/pfstrack/eldamo
    Downloads: 0 This Week
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  • 24

    fast_count_multi

    Extremely fast NGS read counter

    ...Files include: fast_count_multi - reports all counts and RPKM, multithreading support fast_count_deseq - reports gene counts in deseq compatible format, multithreading support fast_count - reports all counts with no multithreading support. usage ./fast_count_multi num_threads gtf_file bam_file(s) > output Requires bamtools API library at run time, and c++0x for compile. git clone https://github.com/pezmaster31/bamtools cd bamtools mkdir build cd build cmake .. make export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:path to/lib g++ -I bamtools/include/ -L bamtools/lib/ -o fast_count_multi fast_count_multi.cpp -lz -lbamtools -fpermissive -pthread -std=c++0x
    Downloads: 0 This Week
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  • 25
    yacas

    yacas

    Computer calculations made easy

    NOTE: Yacas and yagy development has moved to github. The new repositories are located at https://github.com/grzegorzmazur/yacas and https://github.com/grzegorzmazur/yagy . The mailing list has been moved over to https://groups.google.com/forum/#!forum/yacas . The downloads section at sourceforge will be kept up to date for the foreseable future. Yacas is an easy to use, general purpose computer algebra system. It uses its own programming language designed for symbolic as well as arbitrary-precision numerical computations. ...
    Downloads: 2 This Week
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