Formicidae is the official simulator and visualizer for the Ant-Wars competitive programming site, written in Java and SISC. The site is hosted at www.ant-wars.net.
Calamari is a support tool for voice-controlled browser and gaze-controlled browser. This tool extracts positions of words, image and table in browser window.
This is a toolkit for medical natural language processing (NLP). The core engine is general enough to be used in a variety of text processing domains, though the toolkit includes specific support for medical reports and patient de-identification.
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SACIC - Semi-Advanced Command Interpreting Calculator - is a small calculator application capable of evaluating mathematical expressions with arbitrary precision, handling variables, drawing graphs, solving equations and more. It also supports simple scr
LineageEvolver is a simulation system for molecular evolution. Sequence evolution is simulated using modular processes such as substitutions, gene duplication/death, horizontal gene transfer, and more.
neochip is a collection of algorithms for high-density oligonucleotide microarrays. The current version contains heuristic algorithms that attempt to improve the quality of arrays by re-designing their layout (the location of the probes on the chip).
The Linear Algebra class library for Java provides a full set of tools to programmers who need linear algebra operations to use in their own projects.
Currently the library supports elementary matrix operations.
Java Randomness Test Suite is a gui application to run randomness tests on random stream resource (file or algorithm). Application can be run in command line. Includes general statistical tests, NIST and DIEHARD tests.
CloneAnalyzer is a tool for software quality analysis. It allows you to find, display and inspect clones, which are fragments of duplicated source code resulting from lack of proper reuse. It can be used as a plugin for Eclipse and on the command line.
A command-line program to manipulate annotated genetic sequences (initially in EMBL format). The user supplies a pattern to identify which features or qualifiers to process. These can then be deleted, renamed etc
Voxapl is a suite of voice-enabled applications supporting voice recognition and text to speech functions for home automation services. It is written in Java and communicates via xAP and/or xPL messaging.
VKAS uses genetic programming methods to find out the relationship among a set of independent and dependent variable. It is a problem solver software which uses evolutionary computing methods.
When vkas is run, it creates a population of chromosomes at random. This population is then genetically modified and next population is generated. Each population is subjected to fitness calculation and if a suitable answer chromosome is found then vkas stops and the answer is printed. If a...
A service-oriented, single-source, Java integration server with virtual Service Stores(TM) that expose services via web services, HTTP and more. Service Flows provide process automation. Mainframe, database, email, web, soap & ftp adapters are included.
Ober brings the power of the Oberon interface to Java, blending command-line and GUI models. Ancestors are Oberon(http://www.oberon.ethz.ch/), Acme (http://plan9.bell-labs.com/sys/doc/acme/acme.ps) and Wily (http://www.cs.yorku.ca/~oz/wily/index.html).
NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman-Wunsch and Smith-Waterman.
TOEJAM is a Java Answering Machine. Using a Voice Modem as the base of an IVR system, it has been running 24x7 since Nov 2001 at my home handling phone calls and emailing the results. Currently can use US Robotics 56K Pro Msg, USR Sportster may work.
idyuts is \"I Dare You to Use This Shell\"; a pre-hibernate approach to replacing an ORM written with jython functors into a pure-Java language command pattern. The \"pipeline codegen artifacts\" are simple IoC templates, and trivial to adapt
The Mechanical Engineering Department at Oregon State University currently has high-resolution x-ray tomography equipment that allows three-dimensional imaging of the interior of objects. Their existing imaging software is command line based and difficult