Search Results for "java shell" - Page 2

cnvOffSeq is a set of Java-based command-line tools for detecting and genotyping intergenic copy number variation (CNV) using off-target data from whole-exome sequencing experiments.

Full featured free PACS based on dcm4chee and mysql, with remote web accession available for Linux in Debian packaging format for x86 32 and 64 bit processors. (KEYWORDS: PACS,DICOM,HL7,WORK LIST)

TreeBASE is a database and web front end that stores phylogenetic trees and the data matrices used to generate them. The current iteration comprises a complete rewrite of the schema and web layer, and will include a web services layer.

To get access to the code, please check it out with svn as described in the code section.

Ccide reads a source program, in one of several programming languages, expands all embedded decision tables, and generates the new, expanded source. Ccidew processes C language programs directly. The script, ccide, uses ccidew and m4, to process BASIC, JAVA, CC, C++, BASH, QB, VB, and EX(euphoria), source files containing embedded decision tables. Ccide checks all conditions once and only once, avoiding side effects. Ccide checks tables for conflicts and other...

Cross-platform data acquisition and visualization software with an embedded HTTP-server, binary protocol parsing library, protocol emulation server, remote secure administration server, embedded Groovy scripting facilities and HMI (SCADA) visualization module.

***** Discontinued (may still work but will not be updated and supported anymore) ***** This extension connects the simulation platform NetLogo with the statistical analysis software R via Rserve. It adds some new primitives to NetLogo, which offers the interchange of data with R and the call of R functions from NetLogo. See the documentation for more details. There is a similar extension, which use a direct connection to R via rJava/JRI, see http://r-ext.sourceforge.net. This...

A general purpose distributed hash table adapted for sequence analysis. This program searches for all maximal, exact unique n-mers from a given set of genomes. Originally, this program's primary use was to design resequencing microarrays.

An open-source collection of materials for lectures, tutorials, labs, and software for a variety of primarily Computer Science courses. The materials include various course notes, presentation slides, source code samples, etc.

Cyberinfrastructure Shell (CIShell) is an open source, community-driven framework/application for the integration and utilization of datasets, algorithms, tools, and computing resources. Algorithms can be integrated using most programming languages.

superseded by SgpDec http://sgpdec.sf.net Java implementation of the holonomy algorithm for the algebraic hierarchical decomposition of finite state automata.

This project is for particle accelerator start-to-end simulation. The project contains software infrastructure for setting up model run as service/client mode.

A software to store, (PUT) meteorological data from complex free form text format to databases and and GET stored (and already loaded) data from databases using OPeNDAP protocol. Written using Java6, XSD, and C++. It support OPeNDAP clients thanks to

A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.

PulsarHunter is a java based package for pulsar searching. It operates on a number of standard data formats. This package also includes the JReaper graphical candidate selection tool.

OpenGGD aims to be a solution that centralizes the GPS information of a vehicle fleet, acting as an interface among different GPS devices or their control programs and different GIS programs

LT4eL (Language Technology for e-Learning) develops a framework of multilingual language technology tools and semantic web techniques for improving the retrieval and the metadata annotation of learning material.

The WISDOM project is a Grid based production environment used to deploy bio-informatics large scale applications.

PepArML: An unsupervised, model-free, combining peptide identification arbiter for tandem mass spectra via machine learning.

FrAid(FRactal AID) is an interface to Java, allowing it to proc. math. data(functions/equations). A compl. standalone system utilizing the FrAid prog. lang. is available(no need to be Java programmer to use it!). Use instead of Matlab. High res. graphics

JGPShell is a java api to manage content of smart cards in conformance with the Global Platform standard. Features : script language (including if and loop..), can execute commands on many cards at the same time, can get the card list from a MySQL db.

The aim of MIEX (Metadata and Information Extractor from small XML documents) is to create a wrapper for the Stanford Parser, to extract and store metadata (syntactic structures, relationships among words...) from simple XML documents.

Boolean Expression Solver is a command-line utility that generates a truth table for a given Boolean expression.

MultiJADS is a domain independent multiagent active design documents shell. It uses multiagent technology to support activities in concurrent and distributed design systems and is based on the Active Design Documents (ADD) approach.

VoxForge collects user-submitted speech audio files for the creation of Acoustic Models for Free and Open Source Speech Recognition Engines such as HTK, Julius, ISIP and Sphinx.