Search Results for "processing" - Page 17
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Showing 1029 open source projects for "processing"
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Pipeline Builder for NGS tools
Scripting tool for automatize and managing complex NGS analysis
Handling with NGS tool configuration files is a real challenge for modern biologists and biotechnologist. To increase productivity, specificity and enhance the data processing, this tool provides a collection of commands already structured, leading the user in building the correct pipeline for the data he has to analyse. Pipeline Builder is a scripting tool for managing complex NGS analysis pipelines. It helps the user in composing NGS tool commands and composing his own analysis pipeline. It allows for data independent reproducible analysis creating protected environment which separates data from results through variable exportation. ... -
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ArabicDiacritizer
An automatic restoration of Arabic diacritic marks
This is a software of Arabic diacritical marks restoration. It is based mainly on deep architectures using deep neural network. The algorithm generates diacritized text with determined end case. The algorithm is described in detail in: Ilyes Rebai, and Yassine BenAyed 'Text-to-speech synthesis system with Arabic diacritic recognition system', Computer Speech & Language, 2015. We appreciate it very much if you can cite our related work. ************** Installation... -
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LDNI-based Solid Modeling
Solid Modeling Framework in GPU
This project provides a set of solid modeling tools which aims to help processing 3D objects with complex topology and geometry that are widely used in many industrial applications (e.g., microstructure design and manufacturing, biomedical products and applications, jewelry products, reverse engineering). The system is completely GPU-based and heavily based on an implicit representation named LDNI. -
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This project is devoted to the development of natural language processing tools and resources for the Lingala language, which is spoken by tens of millions of people in central Africa.
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OpenNLP provides the organizational structure for coordinating several different projects which approach some aspect of Natural Language Processing. OpenNLP also defines a set of Java interfaces and implements some basic infrastructure for NLP compon
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Text Analyzer
Text analyzing software
An application developed in C using the list and the AVL tree data structures, which analyzes a text (.txt file) giving the following information as an output: 1. the total occurrences of every word in the text 2. the exact line of every occurrence of every word 3. the exact position in the line of every occurrence of every word 4. the exact paragraph of every occurrence of every word 5. the exact sentence of every occurrence of every word The output is also written in a... -
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Larch: Data Analysis for X-ray Spectra
Data Processing and Analysis for X-ray Spectroscopy and More
Larch is a scientific data processing language that is designed to be easy to use for novices and complete enough for advanced data processing and analysis. Larch provides a wide range of functionality for dealing with arrays of scientific data, and basic tools to make it easy to use and organize complex data. Larch has been primarily developed for dealing with x-ray spectroscopic and scattering data, especially the kind of data collected at modern synchrotrons and x-ray sources. ... -
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jmathstudio - Java Image/Signal toolkit
Java toolkit for discrete Image and Signal processing.
JMathStudio is a Java based digital image and signal processing toolkit/library. It is simple to use, portable, light (~300 Kb), extendable and free. Full source code available at https://github.com/bhavyaajani/jmathstudio Android compatible JMathStudio is available @ https://sourceforge.net/projects/jmathstudio-android/ -
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LIBGPIV is software for (Digital) Particle Image Velocimetry (PIV). It contains the core functions for image-processing, image evaluation, validation, post-processing, input/output functions, memory allocation etc.
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Pathomx
Workflow-based data analysis built on IPython
Pathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended and can now be used for any scientific and non-scientific data analysis. -
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This package contains different tools to add NLP capabilities for Lucene 4.x (it has been tested using Lucene version from 4.6.x to 4.8.1). Although it was originally developed for German, it is, mostly, language independent. It allows the user to lemmatize words to be indexed, to weight termy ba their parts of speech (e.g. weighting nouns mor hevaily than pronouns), and to add synonyms taken from GermaNet or a list you provide to the search index and thereby increase recall of lucene.
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Ezys
Ezys 3D medical image registration program
Ezys is a non-linear 3D medical image registration program. Ezys fully exploits the parallel computing power of inexpensive commercial graphics processing units (GPU), resulting in a very fast and accurate program capable of running on desktop PCs and even some laptops. On these systems, non-linear image registrations take less than a minute to complete. Ezys implements a diffeomorphic inverse consistent image registration algorithm with a demons-style regularization based on a non-parametric free form deformation model. ... -
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A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).
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GUDM
A tool for pre-processing and fusing heterogeneous datasets
Global Unified Data Modeler (GUDM) is a bioinformatics software tool used for pre-processing and integrating multiple heterogeneous datasets, collected from multi-modal sources, into an integrated dataset. This integrated dataset is supposed to be used for different types of medical analysis and unified decisions, using different machine learning approaches. -
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matImage
An image processing and analysis library for Matlab
MatImage is a Matlab library for image processing and analysis in 2D and 3D. It contains more than 250 fonctions for image enhancement, filtering, analysis, or visualisation, as well as for creating basic test shapes. It is built as a complement of the Mathworks image processing toolbox (IPT). Project is being transfered to GitHub: http://github.com/dlegland/matImage -
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RFlex
Spectroradiometer control for shipborne reflectance measurements
...The software incorporates GPS signal parsing, control of the sensor platform viewing angle (stepper motor control), sensor triggering and data recording. Continue to the download section for the latest release information Rrs data processing code (the 'fingerprint technique') is also available - but moved to my github page: https://github.com/StefanSimis -------- Oct 2014: a beta version is available (20141006) Sep 2014 news: The latest version is 20140723, addressing some bugs. See the change log. Enjoy! Two Rflex units collected over 30,000 validated Rrs spectra on the Baltic Sea this year! ... -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
...MatrixUser is a great lightweight tool for users who are working in image processing field under Matlab. -
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iMS2Flux is a command line based high-throughput processing tool set for stable isotope labelled mass spectral data targeting metabolic flux analysis. To get started simply download and unzip the iMS2Flux.zip file and follow the getting started document for your OS. Current version 7.2.1 (last updated 9/30/2014) - Completes support and correction functionality for a new user specified generic data class.
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SFrame is a C++ framework built around the ROOT libraries for analysing particle physics data. It gives a very high performance for processing data, by allowing the user to run his/her code on a distributed farm of machines.
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xAffect
Sensor Middleware
xAffect is a software framework for online recording, processing and storage of multi sensor data. It was developed at FZI Research Center for Information Technology, Karlsruhe, Germany. xAffect can be used as a flexible, customizable middleware between physiological sensors and applications which require online feature computation (e.g. biofeedback or affective computing). Moreover, it can also be used as a standalone application for data acquisition and visualization. -
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FamSeq
Variant calling on the basis of pedigree information
...To make the software efficient and applicable to large families, we parallelized the Bayesian network algorithm that copes with pedigrees with inbreeding loops without losing calculation precision on an NVIDIA® graphics processing unit. -
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ijTools
A set of plugins and tools for ImageJ (Image processing sofware)
A collection of plugins and tools for the ImageJ software. Contains modules for image filtering (directional filtering), segmentation, analysis (perimeter estimation, geodesic diameter...), or visualisation (image overlay). -
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T.H.O.R.I.U.M.
T.H.O.R.I.U.M. - Thermooptic radiation iterative universal module.
The purpose of this project is to develop open source, precise, fast and easy-to-use software for radiation heat transfer analysis.
