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A software tool enabling the user to browse through an image stack created by a confocal microscope. Points can be plotted through the stack, producing a digital 3D representation, which can be viewed in 3D and compared with other plots.
The aim of the project is the creation of an multiuser, webenabled, datahandling, processing and visualisation tool for engineering data from the real word - with Datacollection, Charting, Mapping, Alerting, Messaging and Reporting capabilities .....
Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics.
DawNLITE is a Natural-Language-based Image Transmoding Engine. The software transforms an image to a video as recorded by a virtual camera panning and zooming over the image, following a natural language text description of the image.
Open extensible system analysis report tool for Java, based on numerous open source analysis initiatives. The XML/XSL batch-processing framework produces integrated HTML/SVG reports of the systems current state and the development over time.
JIPL (JavaImageProcessing Library) is an attempt to provide an efficient way to load, filter, manipulate, and save images. The goal is to provide an intuitive and extensible library.
The CVR-Lib (Computer Vision and Robotics Library) is a C++ object oriented library for computer vision. It provides lots of functionality to solve mathematical problems, many imageprocessing and analysis algorithms, classification tools, and much more.
A Simple and Efficient Framework for Infinite Resolution Simulation; provides a Java Thread-like class that executes over simulated time. Time units are user-definable, no time quanta, and neither changes to the VM nor pre-processing are required.
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MIVF - Medical Imaging and Visualization Factory,
is a framework for medical applications. It supplies a platform, in which imageprocessing and 3D visualization algorithms can be employed as reusable components (functional modules or plugins).
Spotfinder is an imageprocessing software tool for microarray image analisys. It is written on C++ with QT GUI toolkit and runs on Windows, X11, and Mac OSX.
AlViz is a research prototype for visual ontology alignment implemented as multiple-view plug-in for Protege using J-Trees and Graphs. Based on similarity measures of an ontology matching algorithm AlViz helps to assess and optimize the alignment results
LeafAnalyser has been developed as a fast throughput leaf shape analysis application. It contains features such as automated imageprocessing, data analysis and interactive 2D/3D graphs.
Calculating 2D-Gray-scale bitmaps Calculation of a 3D-rotation-body form a detected area by using different imageprocessing algorithms. Developed for the German Aerospace Center (DLR). Used Projects: Substance (GUI)
This is a visual pipeline framework for batch processing data. It is a plugin to Eclipse Platform. It is a general framework designed to be customized for specific field. One example is http://sf.net/projects/camba
G.A.V. (Graph Algorithm Visualizer) is a tool that visualizes algorithms from graph theory. A step-by-step visualization from each different algorithm allows the user to understand the particular algorithm very easily.
Earth Watch is a plug-in for Google Earth that allows one to build a classifier to discriminate homogeneous textures from data labeled using polygonal overlays which can be extrapolated to unlabeled portions of the globe for identification.
Framewave is a collection of popular image and signal processing routines designed to accelerate application development, debugging, and optimization on x86-class processor platforms.
DNA sequencing quality values, base calling and trace processing
Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of...
JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
TiMAT2 contains tools for low and high level genomic tiling microarray analysis using the Affymetrix, NimbleGen, and Agilent platforms. It is designed for processing single and multi chip data sets from ChIP-Chip, RNA difference, and aCGH experiments.
Scilab Wavelet Toolbox, is designed to emulate Matlab Wavelet Toolbox. Combined with Scilab Imageprocessing toolbox on sourceforge, one could do image wavelet processing the way as the Matlab user does.