A cross-platform statistical package for econometric analysis
gretl is a cross-platform software package for econometric analysis, written in the C programming language.
The Open Source CFD Toolbox
OpenFOAM - The Open Source CFD Toolbox. OpenFOAM is a generic, programmable software tool for Computational Fluid Dynamics (CFD). For more information, see: - Main Website: https://openfoam.org - C++ Source Documentation: https://cpp.openfoam.org - Issue (Bug) Tracking: https://bugs.openfoam.org - User Guide: https://cfd.direct/openfoam/user-guide
BWA is a program for aligning sequencing reads against a large reference genome (e.g. human genome). It has two major components, one for read shorter than 150bp and the other for longer reads.
OpenEMR is an open source medical practice management application (EHR EMR PMS) featuring fully integrated electronic health records, scheduling, electronic billing, internationalization, free support, a vibrant community, and a whole lot more.
SUMO is a microscopic road traffic simulation.
SUMO is an open source, highly portable, microscopic and continuous road traffic simulation package designed to handle large road networks. It allows for intermodal simulation including pedestrians and comes with a large set of tools for scenario creation. Please note that code and issue tracker are now at https://github.com/DLR-TS/sumo/
Virastyar is an spell checker for Persian Language
Virastyar is a free and open-source (FOSS) spell checker for Persian. It stands upon the shoulders of many free/libre/open-source (FLOSS) libraries developed for Persian text processing. Contributors: Omid Kashefi Azadeh Zamanifar Masoumeh Mashaiekhi Meisam Pourafzal Reza Refaei (former member) Mohammad Hedayati (former member) Kamiar Kanani (former member) Mehrdad Senobari (former member) Sina Iravanin (former member) Mohammad Sadegh Rasooli (former member) Mohsen Hoseinalizadeh (former member) Mitra Nasri (former member) Alireza Dehlaghi (former member) Fatemeh Ahmadi (former member) Banafshe Bakhtiari (former member) Neda Pourmorteza (former member)
A 3D simulator game where you can drive, fly, and sail
Rigs of Rods is a 3D simulator game where you can drive, fly and sail various vehicles using an accurate and unique soft-body physics engine. Since 2014, the development continued at https://github.com/RigsOfRods/rigs-of-rods UPDATE: 10/30/2016: removed opencandy installers, replaced with zip files.
GPX viewer and analyzer
GPXSee is a GPS log file viewer and analyzer that supports GPX, TCX, KML, FIT, IGC and NMEA files.
Open Source CAM - Toolpath Generation for 3-Axis CNC machining
BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. A standalone signal viewer supporting more than 30 different data formats is also provided.
A graphical Finite State Machine (FSM) designer.
A graphical tool for designing finite state machines and exporting them to Hardware Description Languages, such as VHDL, AHDL, Verilog, or Ragel/SMC files for C, C++, Objective-C, Java, Python, PHP, Perl, Lua code generation.
A multi-modeling and simulation environment to study complex systems
VLE is a multi-modeling and simulation environment to study complex dynamic systems. VLE is based on the discrete event specification DEVS. and it implements the DSDE formalism (A merge of Dynamic Structure DEVS, DSDEVS, with Parallel DEVS, PDEVS). VLE provides a complete set of C++ libraries, called VFL (VLE Foundation Libraries), to develop DEVS models, to gets results of simulations, to launch simulation on cluster. The models can be developed with the DEVS formalism or with the classical mathematical formalism: Ordinary Differential Equation with Euler, Range-Kutta or QSS integrator, Finite state automaton (FDDEVS, UML State chart, Hybrid Petri net). The VLE environment provides an IDE to develop C++ models, DEVS coupled models. VLE have also three ports to use the VFL with Python, Java and R programming languages.
High-performance read alignment, quantification and mutation discovery
The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program. Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. Subread and Subjunc were published in the following paper: Yang Liao, Gordon K Smyth and Wei Shi. "The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote", Nucleic Acids Research, 2013, 41(10):e108
Python spreadsheet application
Pyspread is a non-traditional spreadsheet application that is based on and written in the programming language Python. The goal of pyspread is to be the most pythonic spreadsheet. Pyspread expects Python expressions in its grid cells, which makes a spreadsheet specific language obsolete. Each cell returns a Python object that can be accessed from other cells. These objects can represent anything including lists or matrices. Dependencies + Python (>=2.7, <3.0) + numpy (>=1.1.0) + wxPython (>=126.96.36.199, Unicode version required) + matplotlib (>=1.1.1) + pycairo (>=1.8.8) Optional dependencies + python-gnupg (>=0.3.0, for opening own files without approval) + xlrd (>=0.9.2, for loading Excel® files) + xlwt (>=0.9.2, for saving Excel files, pyspread >=v0.3.0 required) + jedi (>=0.8.0, for tab completion and context help in the entry line, pyspread >=v0.3.0 required) + basemap (>=1.0.7, for the weather example pys file)
MathMod is a mathematical modeling software
MathMod is a mathematical modeling software that visualize and animate implicit and parametric surfaces. MathMod supports: 3D and 4D plotting and animation, OBJ output file format, Textue and pigmentation support, Noise and Turbulence effects support,Large set of scripted examples. Changelog for MathMod-7.0 (11/02/2018) 1) Add support for complex scripts involving more than 100 functions declarations (previous versions were practically limited to less than 12 functions declarations). 2) Add six new scripts to generate plain-weave and wireframe patterns over any parametric surface (added at the bottom of the parametric models list (Sinus/Catenoid/Knots)_Plain_weave and wireframe_(sinus/shell/knots) ) . 3) Add new function CmpId(n) to return the index of the component under calculation (see "Wireframe_Shell" script). 4) Code cleaning and optimization. For more informations, please visit our bug tracker system on SourceForge: https://sourceforge.net/p/mathmod/tickets/milestone/
Arbitrary-precision CRC calculator and algorithm finder
CRC RevEng is a portable, arbitrary-precision CRC calculator and algorithm finder. It calculates CRCs using any of the 102 preset algorithms, or a user-specified algorithm to any width. It calculates reversed CRCs to give the bit pattern that produces a desired forward CRC. CRC RevEng also reverse-engineers any CRC algorithm from sufficient correctly formatted message-CRC pairs and optional known parameters. It comprises powerful input interpretation options. Compliant with Ross Williams' Rocksoft(tm) model of parametrised CRC algorithms.
System dynamics program with additional features for economics
Minsky enables the simulation of models (particularly from economics) defined in terms of coupled ordinary differential equations. The models are defined using a drawing canvas (rather like VisSim), and a double entry bookkeeping system known as a Godley table.
Subtitle translator from one natural language to other.
Translating subtitles in format SubRip from one natural language to other. It is based on Google Translate without API and therefore without payment. Translator have automatic and manual spell checkers.
ffnet is a fast and easy-to-use feed-forward neural network training solution for python. Many nice features are implemented: arbitrary network connectivity, automatic data normalization, very efficient training tools, network export to fortran code. Now ffnet has also a GUI called ffnetui.
Free Software Medical Suite
FreeMedForms is free and open source medical suite, available for all current platforms (Linux, Mac OS X, Windows and FreeBSD). It is powerful and fully configurable. It can be adapted to many needs: various medical specialties, para-medical specialties and even veterinary profession.
console-mode visual binary diff
hexcompare is a curses-based utility to compare and identify differences between two binary files. These differences are then represented visually with an interactive block diagram.
ADMS is a code generator that converts electrical compact device models specified in high-level description language into ready-to-compile c code for the API of spice simulators. Repository migrated to: https://github.com/Qucs/ADMS For checkout do: git clone https://github.com/Qucs/ADMS.git
**MOVED TO GITHUB** ==> https://github.com/MRPT/mrpt
**MOVED TO GITHUB** ==> https://github.com/MRPT/mrpt The Mobile Robot Programming Toolkit (MRPT) is an extensive, cross-platform, and open source C++ library aimed for robotics researchers to design and implement algorithms about Localization, SLAM, Navigation, computer vision. http://www.mrpt.org/
Simple tools for working with gravitational waves
GWtool: simple tools for working with gravitational waves
Command-line operators for netCDF and HDF files
The netCDF Operators, or NCO, are a suite of file operators which facilitate manipulation and analysis of self-describing data stored in the (freely available) netCDF and HDF formats. Volunteers welcome! See homepage for details and download links.