Ngspice project aims to improve the spice3f5 circuit simulator.
Mjograph is an XY (2D) graph editor that runs on Mac OSX and Java with the goal to provide researchers with a quick way to visualize numerical data and also create publication-quality plots.
GridLAB-D is a new power system simulation tool that provides valuable information to users who design and operate electric power transmission and distribution systems, and to utilities that wish to take advantage of the latest smart grid technology. It incorporates advanced modeling techniques with high-performance algorithms to deliver the latest in end-use load modeling technology integrated with three-phase unbalanced power flow, and retail market systems. Historically, the inability to effectively model and evaluate smart grid technologies has been a barrier to adoption; GridLAB-D is designed to address this problem. User documentation can be found at: http://gridlab-d.shoutwiki.com/wiki/Quick_links The source code is available from GitHub. See https://github.com/gridlab-d/gridlab-d. Issue tracking is handled by GitHub. See https://github.com/gridlab-d/gridlab-d/issues.
An open source framework for LC-MS based proteomics and metabolomics. OpenMS offers data structures and algorithms for the processing of mass spectrometry data. The library is written in C++.
Defraser is a forensic analysis application that can be used to detect full and partial multimedia files in datastreams. It is typically used to find (and restore) complete or partial video files in datastreams (for instance, unallocated diskspace).
This project, developed at University College London, contains programs to perform rigid, affine and non-linear registration of nifti or analyse images. Two versions of the algorithms are included, a CPU- and a GPU- (using CUDA) based implementation.
Portable Ubuntu Linux for Scientific Computing
Released August 22, 2013 Lubuntu Blends: Biochemistry 13.04 (Raring) v5.44 Linux Kernel Image 3.8.0-29 Lubuntu Blends are pre-installed Wubi disk image remixes of Ubuntu and Debian Science meta packages, A custom boot loader allows installations to be copied and automatically booted from most external or USB flash drives. Once up and running, use earlier Lubuntu Remix README instructions here until documentation is updated. https://sourceforge.net/projects/portable-linux/files/ Installation 1. Download the Wubi installer http://releases.ubuntu.com/saucy/wubi.exe 2. Install any flavor of Ubuntu. 3. Swap out the root.disk with the ones provided here. Overview LAMP stack running on localhost (127.0.0.1). Scientific, productivity & media packages include R (Rattle Data Miner), GridEngine, Condor, cooperative computing tools, WINE, LibreOffice, Evolution, Clinica, Neuro Debian Desktop, PsycoPy, OpenVibe, 3DSlicer, Paraview, Openshot. Cheers, Gregory Remington
An eclipse plugin for the openCONFIGURATOR configuration tool
Eclipse update site: http://sourceforge.net/projects/eclipse-plugin.openconf.p/files/update-site/ KNOWN ISSUE WITH THE UPDATE SITE DUE TO SOURCEFORGE ENCRYPTION POLICIES: If you experience problems with the SSL handshake during update please refer to http://gnuarmeclipse.github.io/blog/2017/01/29/plugins-install-issue/ Install via Eclipse marketplace: https://marketplace.eclipse.org/content/ethernet-powerlink-openconfigurator The project provides a plugin for the openCONFIGURATOR core library enabling the creation and configuration of a POWERLINK network (http://www.ethernet-powerlink.org/) in the Eclipse IDE (https://www.eclipse.org). Step-by-step video tutorials: Part 1 - Setup - https://goo.gl/l7eTrC Part 2 - RMN configuration - https://goo.gl/hHY12A Part 3 - PDO mapping - https://goo.gl/8gsRPq Part 4 - Parameter configuration - https://goo.gl/Xjuqjz Part 5 - Modular CN - https://goo.gl/PGCgCk Part 6 - Firmware Handling - https://goo.gl/yBn7ph
TinkerCell is a software for synthetic biology. The visual interface allows users to design networks using various biological "parts". Models can include modules and multiple cells. Users can program new functions using C or Python. www.tinkercell.
A system for computer algebra and symbolic mathematics
OpenAxiom is an open source Computer Algebra System. It offers an interactive environment, an expressive programming language, a compiler, a large set of mathematical libraries of interest to researchers and practitioners of computational sciences.
2D Editor to manage garden or flat plan
GdnPlanner is a tool to create the 2D plans of your garden or flat. See review at http://listoffreeware.com/free-landscape-design-software-windows/
Physically-accurate robotics simulator written in Python
ARS is a physically-accurate robotics simulator written in Python. It's main purpose is to help researchers with to develop mobile manipulators and, in general, any multi-body system. It is open-source, modular, easy to learn and use, and can be a valuable tool in the process of robot design, in the development of control and reasoning algorithms, as well as in teaching and educational activities.
Visual Studio C++ OpenCV images visualizer
NativeViewer is a Visual Studio extension for visualization of OpenCV images stored in the cv::Mat class. A thumbnail image is shown during the debug when a variable is hovered by mouse with CTRL key pressed down. NativeViewer also formats the string displayed in the "Watch" window to express valuable cv::Mat information. The extension works only for native C++ code for both Win32 and x64 platforms. All Visual Studio .NET versions are supported. However, installation process differs for versions 2012, 2010 and pre-2010. Check the quick start guide for details: https://sourceforge.net/p/nativeviewer/wiki/QuickStartGuide Note that if you have Visual Studio 2012 or later, I recommend using Image Watch extension from Microsoft: https://visualstudiogallery.msdn.microsoft.com/e682d542-7ef3-402c-b857-bbfba714f78d
Matlab Toolbox for reading and writing videos.
Matlab Toolbox to process video files, which consists on a set of classes for reading, writing, correcting light changes and generating gaussian pyramids in real time. This toolbox is designed for Windows x64, Max OS X x64 and Linux x64. Through to use of Ffmpeg, it can reproduce and create videos very fast and also do no require to load the entire video file in memory. In addition the C++ code is already compiled in order to simplify the toolbox installation. In order to stay tuned for updates, you can follow the Matlab VideoUtils on Twitter (@VideoUtils): https://twitter.com/#!/VideoUtils If anyone is interested in collaborate, please contact to me -> https://sourceforge.net/sendmessage.php?touser=3811831
Pascal Units for Medical Applications
The PUMA Repository is a collection of Pascal units for medical informatics. It contains reusable source code for a wide field of health-care application development. The code includes converting functions for measurement units and an HL7 engine. PUMA is compatible with Lazarus and Free Pascal. Some of the units also support other Pascal implementations including Delphi, winsoft Pocket Studio and other compilers.
ECMOjo is a simulator and trainer for extracorporeal membrane oxygenation (ECMO). ECMOjo consists of a graphical user interface to allow interaction and train ECMO practitioners.
This project introduces sample programs of the URG library. Applications using URG and URG library are also introduced here. URG is Scanning Laser Range Finder of Hokuyo Automatic Co., for robots, autonomous systems and security systems.
Math.NET aims to provide a self contained clean framework for symbolic mathematical (Computer Algebra System) and numerical/scientific computations, including a parser and support for linear algebra, complex differential analysis, system solving and more
Scientific Visualisation Made Easy
The Simple Medical Imaging Library Interface (SMILI), pronounced 'smilie', is an open-source, light-weight and easy-to-use medical imaging viewer and library for all major operating systems. The main sMILX application features for viewing n-D images, vector images, DICOMs, anonymizing, shape analysis and models/surfaces with easy drag and drop functions. It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with graphical user interfaces and/or via the command-line. See our YouTube channel for tutorial videos via the homepage. The applications are all built out of a uniform user-interface framework that provides a very high level (Qt) interface to powerful image processing and scientific visualisation algorithms from the Insight Toolkit (ITK) and Visualisation Toolkit (VTK). The framework allows one to build stand-alone medical imaging applications quickly and easily.
A simple program for sharing molecular structures with associated data
Sharing lists of molecular structures with associated chemical properties is a common task in computer-aided drug design and medicinal chemistry. WebChem Viewer is a simple, free, open-source program that generates HTML-formatted output that can be viewed in any modern web browser, on any operating system (including mobile), without requiring the installation of additional software. The output can also be easily incorporated into existing web pages. WebChem Viewer is released under the FreeBSD license. It was created by Jacob Durrant, a post-doc in the lab of Rommie E. Amaro.
GUANO - Graphical User interface for performing ANalysis Of variance
Free and open source standalone program capable of conducting between, within, and mixed analyses of variance (ANOVA). Provides a simple graphical user interface for specifying analyses and interaction plots (analyses performed by http://code.google.com/p/pyvttbl/). Features: - Capable of high order factorial designs (> 2 factors) - Within and mixed analyses of variance provide corrections for violations of sphericity (Huynh-Feldt, Greenhouse-Geisser, Box) - A variety of data transformations can be applied (log10, reciprocal, arcsine, square-root, and Windsor) - Generalized eta-squared measures of effect size - Post-hoc power analysis (should match G*Power) - Outputs include tables of estimated marginal means - Up to 4-way interaction plots with errorbars (png, svg) - Confidence intervals account for within-subject variability (where applicable; Loftus and Masson, 1994) - Non-proprietary HTML output files - Non-proprietary codebase Gotchas: - Assumes balanced designs
The FMI++ PowerFactory FMU Export Utility
The FMI++ PowerFactory FMU Export Utility is a stand-alone tool for exporting FMUs for Co-Simulation (FMI Version 1.0) from DIgSILENT PowerFactory models. It is open-source (BSD-like license) and freely available. It is based on code from the FMI++ library and the Boost C++ libraries. The FMI++ PowerFactory FMU Export Utility provides a Python script that creates FMUs from certain PowerFactory models, including the XML model description and shared libraries. Additional files (e.g., time series files) and start values for exported variables can be specified. Currently, two types of simulations are supported: In quasi-static steady-state simulations a power system’s evolution with respect to time is captured by a series of load flow snapshots. RMS simulations allow to calculate the time-dependent dynamics of electromechanical models, including control devices (new in version v0.6).
Moved to new location: http://octomap.github.com/
A probabilistic, flexible, and compact 3D mapping library for robotic systems. OctoMap provides efficient occupancy grid mapping in 3D using octrees. OctoMap development has moved to http://octomap.github.com/
Home of the SasView project for SAS analysis
SasView is a Small Angle Scattering (SAS) analysis package for the analysis of 1D and 2D scattering data directly in inverse space. The focus was originally on neutron data (SANS) but has been used for X-ray’s as well and includes a tool for determining a slit resolution for the SAXSess instrument. SansView also includes PrView to invert SAS data to P(r), a resolution calculator, and a scattering length density calculator among others tools. A simple plugin mechanism is available for users to add custom models. This project was initiated by the NSF funded DANSE project, DMR-0520547, SANS sub-project at the University of Tennessee Knoxville. Acknowledgement of that original funding would be appreciated in any publications that make use of the software.
PyCLP is a Python library to interface ECLiPSe Constraint System
PyCLP is a Python library to interface ECLiPSe Constraint Programmig System. This module try to implement a pythonic interface to ECLiPSe ( http://www.eclipseclp.org ) by compromising on a little bit on performance.