Convert any image to a gerber file
This application allows you to load an image file and convert it to a gerber file. For best result, you can adjust color and tolerance filters and see a preview image before creating output files. Demonstration video: https://www.youtube.com/watch?v=RdQ_jO0g25A Useful information of this application through: https://imagetogerber.wordpress.com/ In case you need it, you can create excellon files from image files with this other app: https://sourceforge.net/projects/image-to-excellon/ If this application has been useful to you, please donate using the Donate tab above.
Tool for conducting systematic literature reviews and studies
ReLiS stands for "Revue Littéraire Systématique" which is French for "Systematic Literature Review". When a researcher wants to address a research problem, he starts by looking at what already exists in the scientific literature (published papers) on the topic. ReLiS is a tool that helps him considerably reduce the effort to analyze the corpus of papers, typically varying between hunderds and thousands depending on the research topic. ReLiS allows the user to follow a systematic process and automate the classification of papers as much as possible during the literature study.
Apprendre les chants d'oiseau
Un programme pour mémoriser les chants d'oiseau. Vous pouvez télécharger soit un installeur pour windows, soit un fichier zip valide pour tous les OS. Une fois décompressé il vous donnera un fichier jar et des répertoires. Il suffira alors de cliquer sur le fichier jar pour que le programme se lance. Merci de tester ce programme et de me signaler tout dysfonctionnement. Ce programme existe en français, anglais, finnois, allemand. D'autres langues sont possibles car les données sont au format texte. Pour le moment certains fichiers ne sont pas encore traduits mais cela ne saurait tarder.
Prediction of MHC class I- and MHC class II-restricted T-cell epitopes. Prediction of proteasomal/immunoproteasomal processing of antigens. Prediction of peptide-TAP binding.
3d plate tectonics in Python
PyTectonics is no longer maintained. There is a replacement, which you can see here: davidson16807.github.io/tectonics.js.
java8 based yb (creator's name) medical mini dictionary with text file
As a medical blogger, I felt that there is a need for platform-independent medical dictionary. Hence 'java 8'. The dictionary must be customizable ie. user should be able to add, delete words. Hence, the use of text file for medical data, instead of xml or some database or sql or some hard-to-understand things. Java 8 can be invoked even from usb pen drives. We have used only one .java file which contains the main class. Compiling it yielded only two classes. Thus simplicity is maintained, without any frills. This medical mini dictionary has only some 10,00 sample words, available on internet freely. The data text file and the classes ARE NOT TO BE COMMERCIALISED. User can go on adding his own words by using a text editor such as geany or gedit.
An open-source Question and Answer plattform software
An open-source Question and Answer plattform software, written in php, mysql. Based on the original Project by askbot.org
Consensus Variant Effect Classification
The package provides SVM models to be used with SVMlight (http://svmlight.joachims.org/) for drawing a consensus out of individual 3rd-party predictions about the effect of mutations. The 3rd party tools are SIFT, Polyphen2, SNPs&GO and Mutation Assessor. The package also provides a series of Perl modules and scripts to assist in the preparation of data. The modules can be used to build custom tools and pipelines, whereas the scripts provide basic executable implementations based on the modules. SVMlight, SIFT, Polyphen2, SNPs&GO and Mutation Assessor are the property of their respective authors and institutions and are not distributed in this package.
!!! Project servers were closed in the beginning of 2012 because the project was not actual anymore (massivity using Android and iOS devices instead of "simple" mobile phones). But source codes are always available as usual !!! A simple mobile j2me/web application that provides positioning of mobile devices connected to GSM/UMTS network or via GPS and lets you share location info by SMS or email. This project also contains GeoSignature Server j2ee application.
Cancer Registry Web Application
Marta è una web application nata per aiutare i Registri Tumori. Accesso sicuro alle informazioni, tool di importazione, algoritmi di analisi e molto altro. Ma ho bisogno di una mano...da solo non ho abbastanza tempo ! Se volete aiutare, contattatemi su: - **gmail/hangout** firstname.lastname@example.org - **skype** sickpuppies73 Più ne siamo e meglio è !
Math tools in Python to tackle down problems in Operational Research fields. Comes with a Django based web interface to allow remote access to complex simulation means.
Variant scoring and linkage mapping for family exome sequencing
MendelScan is a tool for prioritizing candidate variants in family-based studies of inherited disease.
Neurorganon Upper Level Ontology based on Topic Map Standard
NULO is an attempt to define the core ontology of Web 3.0 in a practical, well defined, standardized and consistent way so that it can be shared and used among those users that generate ontologies and end-users that want to organize, exchange and share information resources. In a direct analogy to URL, NULO uses the term Uniform Symbol Representation, USR, to represent any kind of information resource. USR describes the notion of the topic term in the Topic Maps standard. USR will hopefully unify all kinds of symbol representation in the domain of informatics, including of course files and web pages. In NULO there is an explicit distinction between Binary Information Resources (BIRs) and Term Information Resources (TIRs). This way we alleviate understanding and formalization of mapping relations among them. Finally NULO enables multi-language definitions and synonyms defined in other ontologies, as well as multiple naming for various purposes. All the elements of the ontology are clas
Suite of Tools for Phase Unwrapping
PhaseTools is an application of rapid, robust phase unwrapping tools designed for the high-voxel volume, high variance phase images used in MR Elastography. It is written for the ImageJ platform, taking of that platform's support for a wide range of medical image formats, and incporporating the platform's selection and editing tools.
Python scripts for designing polyepitope T-cell immunogens
Given the peptides (T-cell epitopes) PolyCTLDesigner selects flanking sequences to optimize TAP-binding and joins resulting oligopeptides into a polyepitope in a way providing efficient liberation of potential epitopes by proteasomal and/or immunoproteasomal processing and minimizing the number of junctional epitopes. For constructing polyepitopes PolyCTLDesigner utilizes known amino acid patterns of proteasome cleavage and TAP-binding specificity. PolyCTLDesigner is also able to choose antigenic peptides covering selected HLA repertoire with desired redundancy rate. Given the antigen sequences PolyCTLDesigner is also able to select T-helper epitopes. For predicting T-cell epitopes it uses TEpredict.
Pyro Planner allows you to plan and simulate a fireworks show
Pyro Planner allows you to plan and simulate a fireworks show and synchronize it to music. It is meant for programmers to take the exported file and use in their launch solution.
Projeto de viabilização de canal de TV utilizando o MatLab.
Aplicativo para auxílio na elaboração de projetos de viabilização de canais de TV. Baseado na regulamentação nº284 de 7 de dezembro de 2001. Aplicação desenvolvida em MatLab. Utiliza o método da interpolação para estimar os valores das curvas de intensidade de campo, utilizadas nos cálculos. Aplicação destinada a estudantes do curso de engenharia de telecomunicações.
Taxoblast is a pipeline to identify contamination in genomic sequence
Raw genomic sequences are frequently contaminated with sequences of other organism. Their identification is essential for the interpretation of genomic data. In this context it is essential to distinguish between horizontal gene transfers and contamination. The genomic context of sequences can help distinguish the two scenarios. Taxoblast splits genomic scaffolds into sub-sequences of defined length and for each of them determines the closest related taxon. It then summarizes this information for the entire scaffold, taking into account the taxonomic ontology. Scaffolds that exclusively match potential contaminants may be safely removed while sequences matching partially contaminants and partially the target organism may constitute horizontal transfers or assembly artifacts and need to be examined manually.
Make your own flowers
virtualDNA is a Processing3 game with an Android APK file in it. You can make your own flowers by crossing a flowerpool. There is a gamelike feature where you have to make a flower that ressembles a given one.
This script can convert raw diffraction images to JPEG files. Support ADSC, MarCCD, Mar345, RAXIS and PILATUS, and can be run on Windows, Linux and Mac OS X.
Java API and tools for performing NLP and other AI tasks
Java API and tools for performing a wide range of AI tasks such as: word sense disambiguation (released), optimization (5 Evolutionary Algorithms Implemented ETA February 2014), opinion mining (ETA November 2014) and text wikification (ETA July 2014). Gannu includes some graphical interfaces for scientific purposes. When using Gannu please cite: *Jiménez, F. V., Gelbukh, A. F. & Sidorov, G. (2013). Simple Window Selection Strategies for the Simplified Lesk Algorithm for Word Sense Disambiguation.. In F. Castro, A. F. Gelbukh & M. González (eds.), MICAI (1) (pp. 217-227), : Springer. ISBN: 978-3-642-45113-3 The zip file contains Gannu jar, source, API documentation and necessary resources for performing research. Gannu uses the following projects: Weka, JExcel API, Stanford POS Tagger and WordNet. Please cite them when using Gannu.