Portable Ubuntu Linux for Scientific Computing
Released August 22, 2013 Lubuntu Blends: Biochemistry 13.04 (Raring) v5.44 Linux Kernel Image 3.8.0-29 Lubuntu Blends are pre-installed Wubi disk image remixes of Ubuntu and Debian Science meta packages, A custom boot loader allows installations to be copied and automatically booted from most external or USB flash drives. Once up and running, use earlier Lubuntu Remix README instructions here until documentation is updated. https://sourceforge.net/projects/portable-linux/files/ Installation 1. Download the Wubi installer http://releases.ubuntu.com/saucy/wubi.exe 2. Install any flavor of Ubuntu. 3. Swap out the root.disk with the ones provided here. Overview LAMP stack running on localhost (127.0.0.1). Scientific, productivity & media packages include R (Rattle Data Miner), GridEngine, Condor, cooperative computing tools, WINE, LibreOffice, Evolution, Clinica, Neuro Debian Desktop, PsycoPy, OpenVibe, 3DSlicer, Paraview, Openshot. Cheers, Gregory Remington
Artificial Reason Kernel and modules
Artificial Reason Kernel and modules
Approximator is program for experimental data approximation and interpolation (20 dependencies for select). Graphical charts. Export to Gnumeric/OpenOffice Calc/Microsoft Excel. Multi-language interface.
GUI for managing and working with one or more HTCondor pools.
Condor GUI is a tool for managing and working with one or more HTCondor pools. It was developed at the Otto von Guericke University Magdeburg, Germany, to support the daily work using HTCondor. Version History: Version 0.9.3: - QDarkStyleSheet is an optional package now Version 0.9.2: - New layout of job file editor - Keyword arguments in job file editor - Linux compatibility
C and C++ library for the NIBObee, NIBO burger and NIBO 2 robots. The library contains libraries for AVR Studio and Arduino developement, USB drivers and the RoboDude programming software.
ONE-NET is an open-source low power wireless networking protocol.
ONE-NET is both an open standard and an implementation of a wireless network protocol. The protocol was originally intended for home automation but has many more applications where low power, secure communications are required.
PolyViz is a tool for visualizing n-dimensional polyhedra. Motivated by the difficulty of reasoning about the iteration spaces of nested loops with many levels, PolyViz allows users to visualize polyhedral representations of those iteration spaces.
Antimony is a human-readable, human-writable model definition language
Antimony is a human-readable, human-writable model definition language. libAntimony is a library that will read and write Antimony and SBML files and provides an API for other programs to import Antimony models into their own internal formats.
Kohonen neural network library is a set of classes and functions for design, train and use Kohonen network (self organizing map) which is one of AI algorithms and useful tool for data mining and discovery knowledge in data (http://knnl.sf.net).
Visual Studio C++ OpenCV images visualizer
NativeViewer is a Visual Studio extension for visualization of OpenCV images stored in the cv::Mat class. A thumbnail image is shown during the debug when a variable is hovered by mouse with CTRL key pressed down. NativeViewer also formats the string displayed in the "Watch" window to express valuable cv::Mat information. The extension works only for native C++ code for both Win32 and x64 platforms. All Visual Studio .NET versions are supported. However, installation process differs for versions 2012, 2010 and pre-2010. Check the quick start guide for details: https://sourceforge.net/p/nativeviewer/wiki/QuickStartGuide Note that if you have Visual Studio 2012 or later, I recommend using Image Watch extension from Microsoft: https://visualstudiogallery.msdn.microsoft.com/e682d542-7ef3-402c-b857-bbfba714f78d
Opal is a toolkit for wrapping scientific applications as Web services on Cluster, Grid and Cloud resources with ease. Users may access these software as a service using simple Web service APIs from their custom application and workflow environment.
Framework for Systems Biology
The Systems Biology Workbench(SBW) is a framework for application intercommunications. It uses a broker-based, distributed, message-passing architecture, supports many languages including Java, C++, Perl & Python, and runs under Linux,OSX & Win32. It comes with a large number of modules, encompassing the whole modeling cycle: creating computational models, simulating and analyzing them, visualizing the information, in order to improve the models. All using community standards, such as SED-ML, SBML and MIRIAM.
jmathtools, mathematical / scientific java stuff designed to be easily used and modified, not really designed for high performance calculation.
A project creating an open-soruce solution of useful tools for various platforms. The project is currently written in C# under the Microsoft .NET Framework and will also work under MONO on Linux, FreeBSD or Mac OS X.
A library for the control of motors using the TI DRV8833 IC
The Scenario Toolkit is a collection of applications for use in participatory scenario workshops.
The Prajna project is a collection of tools and utility classes combining visualization, geographic displays, data fusion, and semantic reasoning into a cohesive toolkit for enhancing information discovery and reasoning.
Real Space Multigrid based electronic structure code.
News: V2.2.2 released on 10/14/2017 with minor bug fixes. News: V2.2 with performance enhancements, bug fixes and new features released on 06/26/2017. Sources are available with binaries to follow soon. News: V2.1 with many improvements released on 07/15/2016. Sources and binaries are available. RMG is a density functional theory (DFT) based electronic structure code that uses real space grids to represent wavefunctions, charge densities and ionic potentials. Designed for scaleability it has been run successfully on systems with thousands of nodes and hundreds of thousands of CPU cores. It is currently under active development and contributions are gladly accepted.
simulated annealing optimization and importance-sampling
Adaptive Simulated Annealing (ASA) is a C-language code that finds the best global fit of a nonlinear cost-function over a D-dimensional space. ASA has over 100 OPTIONS to provide robust tuning over many classes of nonlinear stochastic systems.
This is a port of LibRTK on C#, and into a small c/c++ library.
RTKLIB is an open source program package for standard and precise positioning with GNSS (global navigation satellite system). RTKLIB consists of a portable program library and several APs (application programs) utilizing the library. This port includes only a library (.so or .dll) for the C/C++ language and a .dll for C#/.NET Framework. RTKSharp is compatible with Windows and Linux using the .NET/Mono Assembly withoout the need of recompilation/cross-building.
Visual ExpressionCalculator is a cross-platform fractional expression, fraction and mixed number calculator / кроссплатформенный калькулятор дробей, смешанных чисел и дробных выражений
A logic simulator. Simulates logic gates, combinational and sequential logic and allows for creating sub-circuits, as well as "black-box" style modules that can emulate any functional block in C# code.
Signs is a development environment for hardware designs in VHDL and other hardware description languages. It provides synthesis and simulation tools which are fully integrated in an Eclipse plugin including graphical netlist and waveform viewers.
Matlab Toolbox for reading and writing videos.
Matlab Toolbox to process video files, which consists on a set of classes for reading, writing, correcting light changes and generating gaussian pyramids in real time. This toolbox is designed for Windows x64, Max OS X x64 and Linux x64. Through to use of Ffmpeg, it can reproduce and create videos very fast and also do no require to load the entire video file in memory. In addition the C++ code is already compiled in order to simplify the toolbox installation. In order to stay tuned for updates, you can follow the Matlab VideoUtils on Twitter (@VideoUtils): https://twitter.com/#!/VideoUtils If anyone is interested in collaborate, please contact to me -> https://sourceforge.net/sendmessage.php?touser=3811831
Parallel Colt is a multithreaded version of Colt - a library for high performance scientific computing in Java. It contains efficient algorithms for data analysis, linear algebra, multi-dimensional arrays, Fourier transforms, statistics and histogramming