Scientific/Engineering Software
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zgoubi
zgoubi is a ray-tracing code in use for charged particle beam dynamics simulations. It can simulate beam dynamics in a large variety of machines and optical systems.
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MathGL
A library for scientific data visualization
A free cross-platform library of fast C++ routines for the plotting of up to 3-ranged data. It can export to bitmap and vector EPS/SVG files. There are window interfaces (GLUT/FLTK/Qt) and console tools. MathGL can be used from C/Fortran/Python/Octav/Lua
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TestDrive Profiling Master
Make your own virtual FPGA system and profile deeply with CI.
TestDrive Profiling Master is a free simulation software for Verilog/SystemVerilog and C/C++. It supports a CI (Continuous Integration) activity for H/W & S/W engineers' cooperation. Run by MS Windows environment, its use is governed by MIT License(Profiles) and LGPLv3(TestDrive Profiling Master). Based on the powerful compiler Verilator and GCC, TestDrive Profiling Master provides a totally free virtual FPGA system environment with various dynamic documents for profiling in deep on your system design. It performs a seamless conversion to a real FPGA environment without any changes of your testing software. I hope you will accomplish a successful design with TestDrive Profiling Master. Q&A : clonextop@gmail.com
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LaueTools
open source python packages for X-ray MicroLaue Diffraction analysis
LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation.
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NSCL SpecTcl Histogramming system
SpecTcl is a Tcl/Tk based histogrammer suitable for analysis of nuclear physics data. SpecTcl is relatively easy to learn, and is based on top of a very open C++ histogramming class framework. SpecTcl has been developed under NSF grant PHY-9528844.
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Tweety
Tweety is a collection of various Java libraries that implement approaches to different areas of artificial intelligence. In particular, it provides a general interface layer for doing research and working with different knowledge representation formalisms such as classical logics, conditional logics, probabilistic logics, and argumentation. Furthermore, Tweety contains libraries for dealing with agents, multi-agent systems, and dialog systems for agents, as well as belief revision, preference reasoning, preference aggregation, and action languages. A series of utility libraries that deal with e.g. mathematical optimization complement the collection.
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Corporate Bullshit Generator
A high-performance random text generator focused on corporate bullshit
The Corporate Bullshit Generator is a high-performance random text generator that is focused on corporate bullshit. It is able to produce, per second, 400 A4 full pages of inspired sentences like "Our turn-key branding strategy drives corporate, scalable, wide-ranging and profit-oriented idiosyncratic incentives." Online app @ http://cbsg.sf.net/ .
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Mathpaqs
A collection of mathematical packages in pure Ada
Various mathematical packages including algebra, finite elements, random variables, probability dependency models, unlimited integers. Pure Ada, fully portable.
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GLOBE_3D
A real-time 3D Engine written in Ada
GLOBE_3D: GL Object Based Engine for 3D. GLOBE_3D is a free, open-source, real-time 3D Engine written in Ada, based on OpenGL. Up-to-date GL bindings - portal rendering - binary space partition - object I/O - tools for importing - and more...
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GraceGTK
Draw curves, colored 2D maps with CAD capabilities
GraceGTK features: Import numerical data to draw curves or colored 2D maps with level contour lines Transform data (Fourier, wavelets), apply filters, fit curves Interactive GUI with CAD capabilities to add drawings Commands interpreter to automate work More details in Files/doc/GraceGTK.pdf file GraceGTK was forked from grace-5.1.22 in 2009. The enhanced commands interpreter has an ascending compatibility with old Grace scripts.
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panFMP
panFMP is a generic framework suitable for harvested XML metadata that is searchable through Apache Lucene without any additional RDBMS. Fields can be defined by XPath allowing for full text queries on all types of fields including numerical ranges.
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Scaffold Hunter
Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.
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A2L Build for MCD - AutoExtractGui
Build A2L from ELF for Automotive MCD tool (e.g. INCA)
You can build A2L file from ELF with this tool. A2L is specified by ASAM, and it is mandatory part for using Measurement/Calibration tools to do Vehicle Testing & Analysis in OEMs and tiers. As one of INCA user, I always feel difficulty of preparing A2L file - it needs a lot efforts to describe both of interface parts (CAN & XCP) and ECU's internal variable parts (MEASUREMENT & CHARACTERISTICS). By this tool, you can easily make your own A2L with simple input. Install this into your PC then you can also find the sample project files - ELF, A2L and AEC.
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Comet MS/MS search engine
Comet open source tandem mass spectrometry (MS/MS) search engine.
Comet is an open source tandem mass spectrometry (MS/MS) sequence database search engine. It identifies peptides by searching MS/MS spectra against sequences present in protein sequence databases. Comet currently exists as a simple Windows or Linux command line binary that only does MS/MS database search. Supported input formats are mzXML, mzML, and ms2 files. Supported output formats are .out, SQT, and pepXML Documentation and project website: http://comet-ms.sourceforge.net
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Netgen Mesh Generator
NETGEN is an automatic 3d tetrahedral mesh generator
NETGEN is an automatic 3d tetrahedral mesh generator. It accepts input from constructive solid geometry (CSG) or boundary representation (BRep) from STL file format. The connection to a geometry kernel allows the handling of IGES and STEP files. NETGEN contains modules for mesh optimization and hierarchical mesh refinement. Netgen is open source based on the LGPL license. It is available for Unix/Linux and Windows.
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FriCAS
FriCAS is an advanced computer algebra system. Its capabilities range from calculus (integration and differentiation) to abstract algebra. It can plot functions and has integrated help system.
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CLIPS Rule Based Programming Language
Expert System Tool
CLIPS is a forward-chaining rule-based programming language written in C that also provides procedural and object-oriented programming facilities.
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hcfr
Free Video Projector/Monitor Calibration Software
Video Projector/Monitor Calibration Software orginally developed as ColorHCFR. This code base is based off version 2.1 and will aim for a more open development process. The opensource version integrates an ArgyllCMS interface for continued meter support and development. If you feel the program has been of value to you since I started working on it about 3 years ago please consider a contribution via the link below. Thanks! -zoyd https://www.paypal.me/zoyd
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GazePointer
WebCam Eye-Tracker
GazePointer is a Webcam eye tracker software that lets you move mouse cursor using your eyes. GazePointer is a software that uses an ordinary webcam to estimate the direction of your gaze. This information can then be passed to other applications. For example, used in conjunction with Dasher, GazePointer allows you to write with your eyes. You can also check out GazeRecorder, which records your eye movement on the screen: https://sourceforge.net/projects/gazerecorder/
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BBMap
BBMap short read aligner, and other bioinformatic tools.
This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded. BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. Very fast. BBNorm: Kmer-based error-correction and normalization tool. Dedupe: Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity. Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s. BBDuk: Filters, trims, or masks reads with kmer matches to an artifact/contaminant file. ...and more!
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CCDciel
Astronomy CCD capture software
A CCD capture software intended for the amateur astronomer. It include all the features required to perform digital imaging CCD observation of celestial objects. Using the standard drivers protocol INDI and ASCOM it can connect and control the CCD camera, the focuser, the filter wheel and the telescope mount. This software is part of a full suite for astronomical observation: https://sourceforge.net/projects/skychart/ https://sourceforge.net/projects/indistarter/ https://sourceforge.net/projects/eqmodgui/ Requirement: https://sourceforge.net/projects/libpasastro/ See also: https://sourceforge.net/projects/indi/
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pygsl python interface for GNU scientifi
A Python interface to the GSL library. The wrapper covers nearly everything GSL provides.
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gretl
A cross-platform statistical package for econometric analysis
gretl is a cross-platform software package for econometric analysis, written in the C programming language.
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GDL - GNU Data Language
GDL - GNU Data Language, a free IDL (Interactive Data Language, see http://ittvis.com/idl/) compatible incremental compiler.
