OpenEMR is an open source medical practice management application (EHR EMR PMS) featuring fully integrated electronic health records, scheduling, electronic billing, internationalization, free support, a vibrant community, and a whole lot more.
SVEditor is an Eclipse-based IDE (Integrated Development Environment) for SystemVerilog and Verilog files. It features syntax coloring, content assist, source indent and auto-indent, and structure display.
Scientific/engineering firmware repurposing HP business calculators!
This project has created scientific firmware for the HP-20b and HP-30b business calculators. The WP 34S turns either of these calculators into a powerful keystroke programmable scientific device. According to our customers, it's the most powerful and fastest RPN scientific pocket calculator ever built. The WP 34S is alive and stable since 2011. We have succeeded in satisfying the most picky users - read about their experiences on http://www.hpmuseum.org/forum/forum-8.html. Find the Owner's Manual v3.2 at https://www.createspace.com/4106229 In 2014, we've updated the WP 34S to version 3.3. Our customers confirm its documentation is excellent and comprehensive (see feedback); an updated printed edition is available from https://www.createspace.com/6329314 since June 2016. We have also produced the WP 31S which is derived from the WP 34S source code. This is an entry-level scientific calculator. Its printed manual is available from https://www.createspace.com/4773370
The project builds a new AI of AIBO from scratch. Currently, I have a white ERS-7 model, Rakka. Project is based on Boost, Qt, OpenCV, other 3rd party software and my own source codes.
Virtual Screening software for Computational Drug Discovery
PyRx is a Virtual Screening software for Computational Drug Discovery that can be used to screen libraries of compounds against potential drug targets. PyRx enables Medicinal Chemists to run Virtual Screening from any platform and helps users in every step of this process - from data preparation to job submission and analysis of the results. While it is true that there is no magic button in the drug discovery process, PyRx includes docking wizard with easy-to-use user interface which makes it a valuable tool for Computer-Aided Drug Design. PyRx also includes chemical spreadsheet-like functionality and powerful visualization engine that are essential for Rational Drug Design. Please visits PyRx home page to learn more about PyRx and watch videos on how to use it.
BoofCV is an open source Java library for real-time computer vision.
BoofCV is an open source Java library for real-time computer vision and robotics applications. Written from scratch for ease of use and high performance, it provides both basic and advanced features needed for creating a computer vision system. Functionality include optimized low level image processing routines (e.g. convolution, interpolation, gradient) to high level functionality such as image stabilization. Released under an Apache 2.0 license for both academic and commercial use.
C++ library for half precision floating point arithmetics.
This is a C++ header-only library to provide an IEEE-754 conformant half-precision floating point type along with corresponding arithmetic operators, type conversions and common mathematical functions. It aims for both efficiency and ease of use, trying to accurately mimic the behaviour of the builtin floating point types at the best performance possible. It automatically uses and provides C++11 features when possible, but stays completely C++98-compatible when neccessary.
Navigational Algorithms - Marine navigation
- Celestial Navigation: Sight Reduction, Line Of Position, Fix... - Positional Astronomy: Nautical Almanac, RA, GHA, Dec - Coastal Navigation: Range, Bering, Horizontal angles, IALA... - Sailings: Rhumbs, Loxodromic, Orthodromic, Meridional parts... - Weather , Tides - Software: PC, Android https://sites.google.com/site/navigationalalgorithms/
Provides a GUI interface to grammatical structure and relations (as parsed by the Stanford Parser) of any text.Contains grammatical relation editor to modify, import, export grammatical relation definitions (tregex patterns and features).
ShelXle is a Qt GUI for SHELXL
ShelXle combines an editor with syntax highlighting for the SHELXL-associated .ins (input) and .res (output) files with an interactive graphical display for visualization of a three-dimensional structure including the electron density (Fo) and difference density (Fo-Fc) maps. See J. Appl. Cryst. (2011). 44, 1281–1284. for details.
Toolkit for working with and mapping geospatial data
GeoTools is an open source (LGPL) Java code library which provides standards compliant methods for the manipulation of geospatial data. GeoTools is an Open Source Geospatial Foundation project. The GeoTools library data structures are based on Open Geospatial Consortium (OGC) specifications.
An innovative GWAS procedure for studies on germplasm population and plant breeding
Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
GDL - GNU Data Language, a free IDL (Interactive Data Language, see http://ittvis.com/idl/) compatible incremental compiler.
Download and browse MSL Curiosity images
Client desktop application to download and browse MSL Curiosity images from Mars. Program is written in PHP-GTK and uses MySQL database.
JBotSim is a multipurpose dynamic network simulator that allows to quickly prototype a distributed algorithm and test its behavior on a set of static or mobile nodes. If mobile, the nodes can be controlled by the mouse or by program.
This application creates off-line atlases of raster maps for various cell phone apps on Android, iPhone and WindowsCE as well as GPS devices (Garmin, Magellan and others)
Fudaa is an Object Oriented and Distributed Integration Platform For Scientific Codes. This platform,written in Java/Corba, gives all the tools needed to build a communication interface and a graphic user interface for scientific codes.
Matlab-based analysis of Atom Probe Data
A collection of scripts and functions for the analysis of atom probe tomography data. Currently, this includes: standard file operations, plotting mass spectra, mass spectra analysis and peak deconvolution. If you are looking for Dan Haley's "weights" program, go here https://sourceforge.net/projects/apttools/files/extras/
specific protein interaction networks from transcript expression
Although protein-protein interaction networks are an ubiquitous component of modern systems biology, comparatively few efforts have been made to tailor their topology to the actual cellular condition under study. Since a simple reduction of the networks to the subset of expressed genes only scratches the surface of higher organisms’ regulatory capabilities, we propose the advanced method PPIXpress that allows to exploit expression data at the transcript-level and is thus able to also reveal alterations in protein connectivity caused by alternative splicing. The original publication can be found on https://bioinformatics.oxfordjournals.org/content/32/4/571 .
A novel transcription factor complex prediction algorithm.
Eukaryotic gene expression is controlled through molecular logic circuits that combine regulatory signals of many different factors. Complexation of transcription factors and other regulatory proteins is a prevailing and highly conserved mechanism of signal integration within critical regulatory pathways and enable to infer controlled genes as well as the exerted regulatory mechanism. We developed DACO (domain-aware cohesiveness optimization), a novel algorithm that combines protein-protein interaction networks and domain-domain interaction networks with the cluster-quality metric cohesiveness. The metric is locally maximized on the holistic level of protein interactions while sophisticated connectivity constraints on the domain level are utilized to account for the exclusive and thus inherently combinatorial nature of the interactions within such assemblies. The original publication can be found on http://bioinformatics.oxfordjournals.org/content/30/17/i415 .
System dynamics program with additional features for economics
Minsky enables the simulation of models (particularly from economics) defined in terms of coupled ordinary differential equations. The models are defined using a drawing canvas (rather like VisSim), and a double entry bookkeeping system known as a Godley table.
Character animation system for games and simulations.
SmartBody is available for download for Windows, Linux and OSX users. SmartBody can also be used on Android and iOS platforms. SmartBody is a character animation platform that provides the following capabilities in real time: * Locomotion (walk, jog, run, turn, strafe, jump, etc.) * Steering - avoiding obstacles and moving objects * Object manipulation - reach, grasp, touch , pick up objects * Lip Syncing - characters can speak with simultaneous lip-sync using text-to-speech or prerecorded audio * Gazing - robust gazing behavior that incorporates various parts of the body * Nonverbal behavior - gesturing, head nodding and shaking, eye saccades - Online and offline retargeting of motion - Automatic skinning and rigging SmartBody is written in C++ and can be incorporated into most game engines. SmartBody is developed at the USC Institute for Creative Technologies from the Character Animation and Simulation group: http://cas.ict.usc.edu
Map your path to clean data with an open source data profiling tool.
Map your path to clean data with Open Studio for Data Quality, the leading open source data profiling tool. Open Studio for Data Quality easily connects to hundreds of data sources and generates analysis to help define the next steps to clean data. Evaluate data quality against custom-defined thresholds, and measure conformance to internal standards such as SKU or external standards such as postal codes. Find out how to connect data with fuzzy matching or correlation analytics. Millions of downloads and a full range of robust, open source integration software tools have made Talend the open source leader in cloud and big data integration.