3D modelling platform written in Java. Contains programming language XL, a rule-based extension of Java. Useful for the algorithmic modelling of 3D structures.
Chemical structures database & machine learning with web services API
AMBIT offers a cheminformatics data management for chemical substances, structures and nanomaterials. Flexible structure, similarity and study queries storage, descriptor calculation and predictive models building via REST web services.User interface for creating read across assessment and generating reports, aligned with regulatory and industrial requirements. Command line applications also available. Integration with third party tools and databases.
A matlab suite for Psycho-Physiological Modelling
PsPM is a powerful tool for psychophysiological modelling. It includes linear convolution models and non-linear models for SCR, and allows for modelling of other signals, too. A flexible import interface and many utilities make this software a standalone tool.
The Cogitant library is a set of C++ classes enabling to easily build applications based on the Conceptual Graph model.
A library for polyhedral mesh generation
cfMesh is a library for volume mesh generation based on OpenFOAM. It implements various meshing workflows for volume mesh generation needed for CFD simulations with OpenFOAM. It is already a part of foam-extend, OpenFOAM for Windows, and Caelus and it is in the process of integration into OpenFOAM+ released by ESI. This repository is intended for contribution and collaborative development. If you have a new meshing algorithm or interested in contributing to cfMesh, do not hesitate to contact us.
"SmartSoft" provides a component based approach to develop robotics software (http://smart-robotics.sourceforge.net/). This project provides a Message based (build on ACE from Douglas C. Schmidt) implementation of the SmartSoft idea.
ShelXle is a Qt GUI for SHELXL
ShelXle combines an editor with syntax highlighting for the SHELXL-associated .ins (input) and .res (output) files with an interactive graphical display for visualization of a three-dimensional structure including the electron density (Fo) and difference density (Fo-Fc) maps. See J. Appl. Cryst. (2011). 44, 1281–1284. for details.
Pioneers - The Settlers of Catan
Pioneers is an emulation of the board game The Settlers of Catan, which can be played over the internet.
C3D is a command-line tool for converting 3D images between common file formats. The tool also includes a growing list of commands for image manipulation, such as thresholding and resampling.
Multi-platform Variable Star Visualisation and Analysis
VStar is a multi-platform, easy-to-use variable star observation visualisation and analysis tool. Data can be read from a file or the AAVSO database, light curves and phase plots created, period analysis performed, and filters applied. Plugins can be developed, e.g. to make additional observation sources available. See also: 1. http://www.aavso.org/vstar-overview 2. http://www.aavso.org/forums/about-aavso/vstar 3. http://dbenn.wordpress.com/category/astronomy-science/vstar 4. http://www.citizensky.org/teams/vstar-software-development
A python-based system to diagnosis and make weather maps (wxmap) of numerical weather prediction models using the Grid Analysis and Display System (GrADS) from opengrads.org
Spheral++ provides a steerable parallel environment for performing coupled hydrodynamical & gravitational numerical simulations. Hydrodynamics and gravity are modelled using particle based methods (SPH and N-Body).
The Earth System Modeling Framework provides high-performance software infrastructure and superstructure for the construction and coupling of climate, weather, and data assimilation applications.
Online bibliographic manager for research groups. Zotero-compatible.
refbase is a web-based bibliographic manager which can import and export references in various formats (including BibTeX, Endnote, MODS XML, and OpenOffice). It can make formatted lists of citations and offers powerful searching, rich metadata, and RSS.
Machine learning software to solve data mining problems
Weka is a collection of machine learning algorithms for solving real-world data mining problems. It is written in Java and runs on almost any platform. The algorithms can either be applied directly to a dataset or called from your own Java code.
A graphical network simulator to design and configure virtual networks
GNS3 is a graphical network simulator that allows you to design complex network topologies. You may run simulations or configure devices ranging from simple workstations to powerful Cisco routers. It is based on Dynamips, Pemu/Qemu and Dynagen. Go to GNS3.com for last releases.
GDL - GNU Data Language, a free IDL (Interactive Data Language, see http://ittvis.com/idl/) compatible incremental compiler.
An interactive viewer for three-dimensional chemical structures.
Over 10,000,000 page views! Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other quantum chemistry programs. Files can be transferred directly from several databases, including RCSB, EDS, NCI, PubChem, and MaterialsProject. Multiple files can be loaded and compared. A rich scripting language and a well-developed web API allow easy customization of the user interface. Features include interactive animation and linear morphing. Jmol interfaces well with JSpecView for spectroscopy, JSME for 2D->3D conversion, POV-Ray for images, and CAD programs for 3D printing (VRML export).
Common software for AMS-A
Common software for AMS-A
GLScene is an OpenGL based 3D library for Delphi, C++Builder and Lazarus. It provides visual components and objects allowing description and rendering of 3D scenes in graphic applications.
GATE (General Architecture for Text Engineering) is an architecture, framework and development environment for developing, evaluating and embedding Human Language Technology. See http://gate.ac.uk for full details.
A PDF Reader and Note-taker for OS X
Skim is a PDF reader and note-taker for OS X. It is designed to help you read and annotate scientific papers in PDF, but is also great for viewing any PDF file. Skim requires Mac OS X 10.6 or higher.
Community driven PCB Layout and Schematic capture software
PCB Layout and Schematic capture tool for Win/Linux/Mac. Source code at https://github.com/sergei-iliev/myNetPCB
3D modeler, 3D game maker, 3D demo maker
3D modeler, 3D game maker, 3D demo maker. A powerfull tool to modelise and create games. Scripting language allows you to code interactions in pseudo-C with the animation and synthetize your own rendering with own-made shaders. The cross-platform project WIN32/MACOSX10.6/LINUX/iOS/ANDROID runs with player/editor. Android .NED Player (install APK and "open with" options with file managers) .APK generator for Android. Support for: Direct3D9 and ShaderModel3. Direct3D10 and ShaderModel4. Direct3D11 and ShaderModel5. OpenGL and GLSL. GLES and GLES20. METAL for OSX and iOS. Added partial compilation of scripts, Intel x86/64 and ARMv7/ARM64. Full port for Linux (Ubuntu/wxWidgets(Gtk3)). iOS .NED Player (with XCode) (only GLES20) Windows Phone 8.1+. Runtime for error management in scripts. WEB update detection and full module management. Support for Retina and 4K UHD. Spotlights and with mapping. Sculpt faces. .blend .dae support. Latest release : 126.96.36.1998
This is a maintenance project for the NMRShiftDB project (hosted on sf.net). Since development of NMRShiftDB has stopped, some interested people continue to maintain the software here and a public instance which can be reached at nmrshiftdb2.sf.net.