An interior design application to draw house plans & arrange furniture
Sweet Home 3D is an interior design application that helps you to quickly draw the floor plan of your house, arrange furniture on it, and visit the results in 3D.
A 3D simulator game where you can drive, fly, and sail
Rigs of Rods is a 3D simulator game where you can drive, fly and sail various vehicles using an accurate and unique soft-body physics engine. Since 2014, the development continued at https://github.com/RigsOfRods/rigs-of-rods UPDATE: 10/30/2016: removed opencandy installers, replaced with zip files.
this is a small project which provides several mathematical function useful for a chemist or somebody working with mass specs. The goal is to provide several cuda and c based functions which can be easily accessed using java, groovy and python.
*** The site is moved to github *** https://github.com/rcsoccersim The RoboCup Soccer Simulator is a research and educational tool for multi-agent systems and artificial intelligence. It enables for two teams of 11 simulated autonomous robotic players to play soccer (football).
Real-time 3D visualization of space
Celestia is an application for real-time 3D visualization of space, with a detailed model of the solar system, over 100,000 stars, more than 10,000 galaxies, and an extension mechanism for adding more objects.
Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.
Stochastic simulator for signaling pathways occuring in biological cells. Handles reaction-diffusion processes in 3D tetrahedral meshes.
The source code has been migrated and is now hosted on Github: https://github.com/jenetics/jenetics Jenetics is an advanced Genetic Algorithm, Evolutionary Algorithm and Genetic Programming library, respectively, written in modern day Java. It is designed with a clear separation of the several algorithm concepts, e. g. Gene, Chromosome, Genotype, Phenotype, Population and fitness Function. Jenetics allows you to minimize or maximize the given fitness function without tweaking it. In contrast to other GA implementations, the library uses the concept of an evolution stream (EvolutionStream) for executing the evolution steps. Since the EvolutionStream implements the Java Stream interface, it works smoothly with the rest of the Java Stream API. Other repositories: - https://github.com/jenetics/jenetics Maven: - http://search.maven.org/#search|ga|1|a%3A%22j
CharGer is a conceptual graph (CG) visual editor written in Java. It is intended for researchers and practitioners who want to create and edit graphs for CG knowledge bases. CharGer supports most CG features, including actors, contexts, and interchange. Graphs can be exported to various image formats.
PHP based web bibliography management system
Aigaion is a php/mysql based multi-user system for managing annotated bibliographies. It allows the user(s) to order publications in a self-chosen (overlapping) topic structure, offers BibTex and RIS import and export and has an intuitive user interface. Currently looking for contributors and co-maintainer(s) to handle planned upcoming releases. Check http://www.aigaion.de for more. Support and Documentation can be found at http://www.aigaion.de.
BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
JAGS is Just Another Gibbs Sampler. It is a program for the statistical analysis of Bayesian hierarchical models by Markov Chain Monte Carlo.
AJT is a set of utility classes for Java for handling some bioinformatics data, graphics file export, GUI widgets, and classes that should long have been added to the official Java API.
PARPs database is a web-based tool whose features include experiment annotation, protein database searching, protein sequence management.Statistical validation, , visualization, and converters from raw MS data open mzXML mzData format
PARs is a bioinformatics tool for the analysis of cis-regulatory DNA sequences. Composed of two parts: a suite of sequence analysis algorithms for predicting cis-binding sites in DNA sequences and a GUI for visualisation and exploration of the results.
Toolkit for working with and mapping geospatial data
GeoTools is an open source (LGPL) Java code library which provides standards compliant methods for the manipulation of geospatial data. GeoTools is an Open Source Geospatial Foundation project. The GeoTools library data structures are based on Open Geospatial Consortium (OGC) specifications.
The FAKE GAME tool uses natural evolution to evolve Data Mining models. It incorporates several preprocessing, optimization and visualization methods aimed to streamline the Knowledge Discovery process. Knowledge Extraction from data is being automated!
Simple and intuitive 2D vector drawing for electronics and not only.
A multiplatform vector drawing program with a complete library of electronic symbols. Schematics and drawings are stored in a very compact text format. There is no netlist concept behind the drawings (so no simulation, and this is a choice) but this allows a great graphical flexibility and ease of use, making FidoCadJ the perfect tool for exchange sketches in forum and newsgroup discussions with a few clicks. Drawings can be exported in several graphic formats, such as pdf. Follow the development live on Twitter: https://twitter.com/davbucci
The most popular mindmapping and brainstorming software
Professional and powerful brainstorming and mind mapping software tool,open source,Eclipse Community Award 2008 winner,often used for capture ideas,knowledge/project management and GTD,supporting fishbones/org-charts/tree charts/spreadsheets,easy-to-use.
Machine learning software to solve data mining problems
Weka is a collection of machine learning algorithms for solving real-world data mining problems. It is written in Java and runs on almost any platform. The algorithms can either be applied directly to a dataset or called from your own Java code.
A portable, multi-platform, command-line driven graphing utility
A famous scientific plotting package, features include 2D and 3D plotting, a huge number of output formats, interactive input or script-driven options, and a large set of scripted examples.
PyMOL is an OpenGL based molecular visualization system
PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone!
A web based Geographic Metadata Catalog for data description and discovery. It implements international standards (e.g. ISO19115/19139, ISO19115-3, Z39.50, CSW 2.0, OGC). It originates from the United Nations and is used by many governments as geoportal software Source code available on github https://github.com/geonetwork/
Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
Numerical Bifurcation Analysis Toolbox in Matlab
MatCont is a Matlab software project for the numerical continuation and bifurcation study of continuous and discrete parameterized dynamical systems. Leaders of the project are Willy Govaerts (Gent,B) and Yuri A. Kuznetsov (Utrecht,NL) and Hil G.E. Meijer (UT, Enschede, NL). Matcont for ODE's and MatcontM for Maps Publish a paper using our software? That's great. Please do us a favour and cite: New features of the software MatCont for bifurcation analysis of dynamical systems. A. Dhooge, and W. Govaerts, Yu.A. Kuznetsov, H.G.E. Meijer and B. Sautois, MCMDS 2008, Vol. 14, No. 2, pp 147-175 In case you're stuck, use the forum, but to get a good answer provide: 1. What command do you give when this appears? Provide the exact steps (not all code, a simple example will suffice). 2. Indicate whether you use the GUI or CL version. Also Matlab-version and Operating System may help. 3. We hope you followed the tutorial(s)?