3D Genome Tuner draws circular genome map and enables viewing multi-genomes in 3D context. It also provides genome analysis and sequence alignment, making it a powerful tool in genome studies and demonstrations.
The g3DGMV program was designed as a free viewer for Digital Elevation Model (DEM ) and Digital Line Graphs (DLG ) maps. Both of these formats are available from various locations on the web. These maps can be viewed from various angles.
A project to create an interactive, scientifically-accurate 3D model of the HIV virus. Particularly intended for use in education.
3D Charts - Templates for PovRay(TM)
Here are PovRay(TM) templates for creating amazing 3D plots (histogram, surface, box&whisker). These are macros in PovRay Scene Description Language (SDL), you have to #include into Your scene, manually or by PovEdit Menu System. Nice renderings!
The 3D Slicer is freely available, open-source software for visualization, registration, segmentation, and quantification of medical image data. Follow the link for more info: http://slicer.org
Open3DCFD is a CFD solver for compressible flows in thermodynamic nonequilibrium migrated from FORTRAN to an object-oriented C++ environment.
An object oriented Java package that can be used to store 3-D graphs and perform various functions on them, arranging nodes with a spring embedder and generating VRML output. Visit http://vrmlgraph.i-scream.org.uk for documentation and examples.
A 3D viewer for phylogenetic trees. Speciation events are displayed in the plane according to the species tree, while duplication events are displayed in the other dimension.
Simulation of the 3D Watermaze used to study spacial learning in animals. This program will hopefully improve on an existing program to aid with a similar study in humans.
Application that simulates gravity interaction between objects in 3D space.
3DBrainExplorer is a lightweight OpenGL-based 3D renderer for scientific visualization of volumetric data (NIfTI) featuring real-time image manipulation, AAL brain labels (Tzourio-Mazoyer et al., 2002), SPM5 statistical images and stereo display.
3DEarth is a tool which displays, and encourages user interaction with, a 3d view of the planet Earth, including satellite / aerial photography (downloaded dynamically from various internet sources), elevation (e.g. hills/mountains), coastlines etc.
3DMolvis is a tool designed to make easy learning of basic structure and function of biological molecules.
3DProS is a programming tool. It helps people create 3D animations, design custom 3D controls and solve lots of graphic problems easily, just by drag and drop. Besides a built-in language called MathScript, it also supports Free Pascal and MinGW C++
Java3D 3DS FileLoader for platforms supporting JDK1.4 and Java 3D Highly functional, multiplatform 3DS File format loader Supports: Heirarchical animation Cameras Point Lights Directional Lights Textures Smooth Groups and other features
atom probe software : visualisation and data analysis
This software is designed to help users visualize and analyze 3D point clouds with an associated real value, in a fast and flexible fashion. The primary use is in Atom Probe Tomography, which is an atomic imaging technique. However the program may also be useful in other areas, such as geospatial data, lidar, etc.
3DimViewer is a lightweight 3D viewer of medical DICOM datasets.
3DimViewer is a lightweight 3D viewer of medical DICOM datasets that is distributed as open source software. The viewer is multiplatform software written in C++ that runs on Windows, Mac OS X and Linux systems. 3DimViewer source codes are available on Bitbucket (https://bitbucket.org/3dimlab/3dimviewer). Video tutorials can be found on YouTube (https://www.youtube.com/playlist?list=PLCvwUmKRw9ZO4YexLKEXmw_2jPo-kXVRn).
A powerful online judge in php and python.
3POJ, developed in PHP and Python. Allow users to add problems, multi-judges, contests and even more :D Simple and powerful!
a 3d replacement for mosix's boring text based mon program. Interaces with gomd (www.nonngu.org/gomd) so you dont have to run this big openGL app on your cluster, just a handy server.
3dengfx is a free cross platform 3D graphics engine, that provides a multi-layered abstraction mechanism for visualizing realtime 3D environments or scientific data, with a small emphasis towards special effects.
3i is an open source augmented reality system built on top of the Open Handset Alliance's "Android" smartphone platform.
Several RNA and protein structure volume calculation tools.
A research project aimed at creating a graphical interface that provides a spatial and temporal context in which to browse the genomic regulatory network of the sea urchin during the early stages of its embryonic development.
Stereo 3D wireframe projection of 4D objects. Rotations about the 6 planes of various 4D(R4) objects in Java. Uses documented file format for the 4D objects. Supports alternating lcd shutter 3D glasses and the red-blue 3D glasses. No 3D monitors yet. If you wish to contact me regarding this project, do. It is a joint project. Project is unchanged as of July 2007. Got hypot() and perspective wrong.
4-Dimensional Cell Simulator (4DiCeS) is a framework on hybrid (stochastic and deterministic) modeling and simulation of (whole) cell environments in 4D. The framework may incorporate any reaction and diffusion algorithms applicable in a 4D grid layout.