Yabe - Graphical explorer program for BACnet devices - C# code
Graphical explorer program written in C#, for browsing BACnet devices. Currently supports both BACnet IPv4, IPv6 + BACnet MSTP + BACnet PTP + BACnet Ethernet. Basic functions for read, write, read multiple, write multiple, iam, whois, subscribeCOV, notify, WriteFile, ReadFile etc. Includes three demo server applications : a generic server, a wall mounted room controller simulator, a weather server (gets data from an Internet webservice). Includes a lot of samples C# source code. Raspberry Pi server sample code, also tested on Beaglebone & Intel Edison. Bacnet/Mstp capture tool (only Wireshark and an Rs485 adaptor are required) See Readme.txt for more information. Developers/Contributors team : Morten Kvistgaard (2014-2016), Frédéric Chaxel (2015-2018), Adam Guzik (2015), Christopher Günther (2015), Thamer Al-Salek (2016)
Tweety is a collection of various Java libraries that implement approaches to different areas of artificial intelligence. In particular, it provides a general interface layer for doing research and working with different knowledge representation formalisms such as classical logics, conditional logics, probabilistic logics, and argumentation. Furthermore, Tweety contains libraries for dealing with agents, multi-agent systems, and dialog systems for agents, as well as belief revision, preference reasoning, preference aggregation, and action languages. A series of utility libraries that deal with e.g. mathematical optimization complement the collection.
Long read to rMATS
lr2rmats is a Snakemake-based light-weight pipeline which is designed to utilize both third-generation long-read and second-generation short-read RNA-seq data to generate an enhanced gene annotation file. The newly generated annotation file could be provided to rMATS for differential alternative splicing analysis.
A Matlab toolkit for analyzing EEG/ERP datasets, especially PCA. If you run into a problem, please send me a note and I'll fix it. The tutorial is in the documentation folder and the tutorial data is a separate download (tutorial data.zip).
A framework for implementing real-time control systems
A framework for the implementation of advanced real-time control systems which uses signal/block-based schematics (like Simulink) extended by several features like state machines and online-exchangeable sub-simulations. Besides, this framework properly handles multiple threads, their communication, allows to synchronise control systems to external events (e.g. variable timers or incoming network packages) and provides many other nice features. Because of a high-level schematic-description language -- in form of provided Scilab commands -- only a minimal implementation-effort (no error-prone C-programming) is required.
Time-dependent simulation of open and closed quantum systems
WavePacket is a program package for numerical simulation of quantum-mechanical wavepacket dynamics for distinguishable particles. It can be used to solve one or more (i.e. coupled channels) time-independent or time-dependent (linear) Schrödinger and Liouville-von Neumann-equations. Optionally accounting for the interaction with external electric fields within the semiclassical dipole approximation, WavePacket can simulate modern experiments using ultrashort light pulses in photo-induced physics or chemistry. WavePacket is especially suitable for teaching of quantum mechanics as well as for research projects in physics, chemistry, and scientific computing. The present C++ version is an object-oriented rewrite of the existing Matlab version aiming to be more flexible. In particular, the goals are easy handling of open and closed systems and support for unusual setups.
FastVersion is a Qgis plugin for data versioning in a Postgis database
FastVersion is a Qgis plugin for data versioning in a Postgis database. This plugin provides data versioning to tables with geometry stored in postgis. It allows to create, changes and eliminate versions, and within each version , to insert, modify and eliminate elements. It is possible carry out the processes of “post” from one version to another, with conflict resolution functionality. The system uses algorithms and data structures so that information is not duplicated each time a version is created. We recommend downloading it from the Qgis app. Plugins->Manage and Install Plugins->Settings->Show also experimental plugins Plugins->Manage and Install Plugins->Search FastVersion If downloaded from sourceforge, it must be unzipped in \.qgis2\python\plugins
CIRT - CUDA Interactive Ray Tracer
CIRT is an implementation of PRTP (Programmable Ray Tracing Pipeline). Mainly it is to be used as a ray-tracing equivalent of OpenGL. It allows the user to implement various ray-tracing related algorithms.
A collection of tools that can be used to generate monitors ("watchdogs") from LTL formulae. This is known from the area of runtime verification. For more information, see the associated project homepage.
BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. A standalone signal viewer supporting more than 30 different data formats is also provided.
Tool for assessment of environmental services on farm scale.
The "MANUELA"-project is designed to enable farmers for the documentation of the environmental services provided by their holdings. Localization, description and evaluation of these services are joined within an open source Geographic Information System (OpenJUMP) and a PostgreSQL database.
This Nutrition Software consists of easy modifiable tables of selected food nutrients in one file, helps to make an individual diet. The information in this file was obtained from: Source (or Adapted from, as appropriate): Canadian Nutrient File, Health Canada, 2010 and other sources. This file gives an idea of which nutrient could be more likely found in fair quantities in some product. Use that file as a reference tool. Do not make any diet plans based on this information only, since the value of each nutrient in any product is given averaged and do not mirrors the exact number in product that you consume. DISCLAIMER Here "this file" means - this file and links within. The information in this file is for educational purposes only. I take no responsibility for any loss or damage to health as a result of using the information provided in this file. Usage It is LibreOffice document. Please allow macros and do not update links when you are asked after you open it.
Discovering clusters with varying densities
This site provides the source code of two approaches for density-ratio based clustering, used for discovering clusters with varying densities. One approach is to modify a density-based clustering algorithm to do density-ratio based clustering by using its density estimator to compute density-ratio. The other approach involves rescaling the given dataset only. An existing density-based clustering algorithm, which is applied to the rescaled dataset, can find all clusters with varying densities that would otherwise impossible had the same algorithm been applied to the unscaled dataset. Reference: Zhu, Y., Ting, K. M., & Carman, M. J. (2016). Density-ratio based clustering for discovering clusters with varying densities. Pattern Recognition. http://www.sciencedirect.com/science/article/pii/S0031320316301571
A data dependent dissimilarity measure based on mass estimation.
This software calculates the mass-based dissimilarity matrix for data mining algorithms relying on a distance measure. References: Overcoming Key Weaknesses of Distance-based Neighbourhood Methods using a Data Dependent Dissimilarity Measure. KDD 2016 http://dx.doi.org/10.1145/2939672.2939779 The source code, presentation slide and poster are attached under "Files". The presentation video in KDD 2016 is published on https://youtu.be/eotD_-SuEoo . Since this software is licensed under the Gnu General Public license GPLv3, any derivative work must be licensed under the GPL as well. This software is free only for non-commercial use. For commercial projects, it is possible to obtain a commercial license through the Commercial Services of Federation University Australia. Please email the first author of the original paper firstname.lastname@example.org for any enquiries about this software.
A framework for solving partial differential equations
Overture is a framework for solving partial differential equations (PDEs) in complex, possibly moving geometry. Overture uses overlapping grids to represent the geometry. The software includes grid generation capabilities, PDE solvers for fluids, solids, and fluid-structure interactions (FSI) as well as electromagnetics.
TCP Experiment Automation Controlled Using Python
TEACUP automates many aspects of running TCP performance experiments in a specially-constructed physical testbed. TEACUP enables repeatable testing of different TCP algorithms over a range of emulated network path conditions, bottleneck rate limits and bottleneck queuing disciplines. TEACUP utilises a text-based configuration file to define experiments as combinations of parameters specifying desired network path and end host conditions. When multiple values are provided (e.g. for TCP congestion control algorithm), an experiment is made up of multiple tests. For each experiment and test, TEACUP collects a range of data, such as tcpdump files of traffic seen or TCP stack information (e.g. using Web10G). TEACUP also collects a variety of metadata from the end hosts and bottleneck router, such as the actual OS/kernel version(s) used. TEACUP also provides some simple tools for analysing the results of experiments, such as plotting a flow's experienced RTT over time.
This is the software repository of CEqEA, the ab-intra reasoning and modelling environment
Axiom is a computer algebra system. It consists of an interpreter, a compiler and a library of algorithms. Axiom is an excellent research platform as well as a useful tool for scientific programming.
Experience-Based Language Acquisition is a computational model of human language acquisition. It is written entirely in Java and currently acquires a protolanguage of nouns and verbs language based on visual perception.
Portable Scientific Python 2/3 32/64bit Distribution for Windows
WinPython is a free open-source portable distribution of the Python programming language for Windows XP/7/8, designed for scientists, supporting both 32bit and 64bit versions of Python 2 and Python 3. Since September 2014, Developpement has moved to https://winpython.github.io/
NETGEN is an automatic 3d tetrahedral mesh generator
NETGEN is an automatic 3d tetrahedral mesh generator. It accepts input from constructive solid geometry (CSG) or boundary representation (BRep) from STL file format. The connection to a geometry kernel allows the handling of IGES and STEP files. NETGEN contains modules for mesh optimization and hierarchical mesh refinement. Netgen is open source based on the LGPL license. It is available for Unix/Linux and Windows.
Common software for AMS-A
Common software for AMS-A
Quantitative Content Analysis or Text Mining
KH Coder is a free software for quantitative content analysis or text data mining. It is also utilized for computational linguistics. You can analyze Japanese, English, French, German, Italian, Portuguese and Spanish text with KH Coder. Also, Catalan, Chinese (simplified), Korean, Russian and Slovenian language data can be analyzed with the latest alpha release (Version 3). KH Coder provides various kinds of search and statistical analysis functions using back-end tools such as Stanford POS Tagger, FreeLing, Snowball stemmer, MySQL and R.
Simple, pragmatic enterprise architecture for the mobile
Stencil for Omnigraffle drawing tool (Mac & iPad) to enable architecture description views to be created for the TRAK Enterprise Architecture Framework (available on Sourceforge via the trak, trakmetamodel and trakviewpoints projects). Provides the set of shapes and connectors needed to create TRAK views to describe the enterprise, concepts, systems and how they're procured. Using the stencil in conjunction with the defining TRAK documents you can be up and creating architecture description in minutes. When used with OmniGraffle Pro it also provides the attributes for each object to capture extra information. When used on the iPad and with OmniGraffle on the Mac this information is preserved. This project is the master source of the stencil which is also distributed via OmniGraffle and Graffletopia. (Visio equivalent for TRAK at https://sf.net/p/trakforvisio)