Variant detection in next-generation sequencing data
Variant detection in massively parallel sequencing. For one sample, calls SNPs, indels, and consensus genotypes. For tumor-normal pairs, further classifies each variant as Germline, Somatic, or LOH, and also detects somatic copy number changes.
LogiFlash is an Adobe Flash based digital logic simulator. This project does a re-implementation of the existing ActionScript 1.0 based implementation (done at the Goethe University / Germany) in ActionScript 3.0 with new features.
Annotation and enrichment of Next-Gen sequencing data
Note: This version requires additional SQLite database files. Contact the developers to obtain them. Use http://www.integrativegenomics.org/ for the latest data and analyses. GenomeRunner is a tool for automating genome exploration. It performs annotation and enrichment analyses of user-provided genomic regions (SNPs, ChIP-seq binding sites etc.) against >6,000 (human genome) epigenomic features available from the UCSC genome browser. Input - any genome-wide data data in .bed format (tab-delimited text file with chrom, chromStart, chromEnd). Annotation analysis output - detailed annotation of each genomic region in input data. Used to prioritize individual genomic regions by the total number of epigenomic features they co-localize with. Enrichment analysis output - p-values of statistically significant co-localizations of input genome-wide data with genome annotation features selected for the analysis. Used to prioritize epigenomic features associated with user data.
A unique natural-language processing software, called Discovery, created on the CA Visual Objects/Vulcan.NET environment, which also has potential for effective "shallow approach" machine translation.
Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics.
Java toolkit for discrete Image and Signal processing.
JMathStudio is a Java based digital image and signal processing toolkit/library. It is simple to use, portable, light (~300 Kb), extendable and free. JMathStudio provides a developer with many of the advanced and basic discrete image and signal processing utilities ( 500+ useful operations/transforms). This is a standalone toolkit with no dependencies other than the JDK/JRE 1.5 or higher. JMathStudio support an entire image/signal processing pipeline right from the loading of the data (external image, audio, raw data) to data processing, data visualization (display and plot) and saving of the data (as external image, audio, raw data). Author: Bhavya Ajani (email@example.com) Android compatible JMathStudio is available @ https://sourceforge.net/projects/jmathstudio-android/
Viewer and analyzer for gps tracks
VMT allows to view your gps tracks on various formats of map, and to analyze the track performance both on numeric and graphical format. VMT also allows to manage different kind of mapsets and to manage your PoI and waypoints.
Observational Data Recorder permits to read any multimedia file, capture timecodes and associate them to different behavioural sequences. You will be able to export your data in different files and graphs compatible with any spreadsheet software.
Mobile Planet Tracking, lets you track the position of any of the 8 planets in the Solar System, you can specify your current earth position, date and time to get the most approximated values.
Making a bot that can learn, and may also learn to learn more. We need your idea's
Projekt ten służy stworzeniu programu Open Sourcowego, który będzie darmową alternatywą dla płatnych programów dla konstruktorów (np. program Rama).
The Staples Data Population & Migration Administrator is an application for the SuperWikia programming language which auto-builds critical infrastructure for cloned patches and provides backend server capability for smaller projects.
This software uses data gathered from published biodiversity inventories, together with physical and vegetational maps, to build a biodiversity map (darkening geographical landscape according with the richness/diversity of species).
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Android API for discrete Image and Signal processing.
JMathStudio-Android is an API for Image & Signal processing for your Android application. It is simple to use, portable, light (~300 Kb), extendable and free. JMathStudio-Android provides a developer with many of the advanced and basic discrete image and signal processing utilities ( 500+ useful operations/transforms). A minimum Android platform with API Level 3 is required for Android projects using this API. Author: Bhavya Ajani (firstname.lastname@example.org) Refer pure Java based implementation @ https://sourceforge.net/projects/jmathstudio/ Android is a trademark of Google Inc.