questionnaire, survey, php, yaml, likert, tests, research, psychology
Testmaker is an application written in PHP for creating questionnaires that can be administered online. Provides multiple response formats (likert, single selection, multiple choice, open, etc.) and methods to store the results. The documentation is available at: http://jharo.net/dokuwiki/testmaker (spanish)
Phylogenetic software that implements the algorithms "Fast Computation of Distance Estimators" and "Fast Neighbor Joining".
mCode is designed to be a dynamic 3d platform for simulation and visualization, with a focus on visual networking.
This project is for maintaining a linux system that concentrates on math, logic, and geometry related softwares.
POPBAM is a tool to perform evolutionary or population-based analyses of next-generation sequencing data. POPBAM takes a BAM file as its input and can compute many widely used evolutionary genetics measures in sliding windows across a genome.
An innovative GWAS procedure for studies on germplasm population and plant breeding
A scheme (lisp) interpreter written in ARM assembly language (ARM7TDMI, ARM920T, Cortex-M3) for education, robotics, wearable devices. Tested on NXP LPC-1300,1700,2000, ATMEL AT91SAM7, STM STR711, STR911, STM32, CIRRUS EP9302, LMI LM3S1968, TI OMAP.
If you manage phylogenetic data, Bio::NEXUS can make your life easier with a library and ready-made tools to manipulate and visualize NEXUS files (see http://www.molevol.org/nexplorer and http://search.cpan.org/dist/Bio-NEXUS/doc/Tutorial.pod).
CMAKE build enviroment for LPC2000 and LPC17xx Cortex MCUs
The goal of project is to build CMSIS like environment for LPC2000 series MCU and to write RTOS for LPC2000 and Cortex Microcontrollers
A Monte Carlo simulation of Major League Baseball(TM), used to find the best strategies in a baseball game. The effect of different batting orders and the addition of one super-star can be tested and archived in retrosheet format.
pySTEP or Python Strongly Typed gEnetic Programming: A light Genetic Programming API that allows the user to easily evolve populations of trees with precise grammatical and structural constraints.
A Collection of Useful C++ Classes for Digital Signal Processing This project has been moved to here: http://code.google.com/p/dspfilterscpp/
Body Mass Index (BMI) Calculator
This is a portable BMI or Body Mass Index calculator. Calculate your BMI then compare it to categories provided by the National Heart, Lung and Blood Institute.
This project shows how to integrate NVIDIA CUDA GPU programming API into ITK (Insight Segmentation and Registration Toolkit) library
Implementation of a feed-forward backpropagation artificial neural network using CUDA.
A software package for processing and analyzing chemical trajectories
The implementation of the methodology presented in the our papers: M.Döntgen, M.-D.Przybylski-Freund, L.C.Kröger, W.A.Kopp, A.E.Ismail, K.Leonhard, "Automated Discovery of Reaction Pathways, Rate Constants, and Transition States Using Reactive Molecular Dynamics Simulations", J. Chem. Theory Comput. 11 (2015), 2517-2524 L.C.Kröger, W.A.Kopp, M.Döntgen, K.Leonhard, "Assessing Statistical Uncertainties of Rare Events in Reactive Molecular Dynamics Simulations", J. Chem. Theory Comput. 13 (2017), 3955-3960 is available as open software under the MIT license. Simply checkout the SVN repository or download the latest ZIP archive. Instructions can be found in the readme files. Check the Wiki for Bug reports and fixes.
CITYOPT mission is to optimize energy systems in smart cities. The project will create a set of applications and related guidelines that support efficient planning, detailed design and operation of energy systems in urban districts.
console tools, batch scripts, shell scripts, shell tools, utilities
Set of scripts and utilities to support scripting blocks under WindowsNT. I have been wrote and collected different scripts and utilities under one project with Open Source option to give users a choice to a little bit enhance usability of old cmd.exe interpreter and Cygwin/Msys environments. A new version of console utilities is always UNDER DEVELOPMENT. Use the SVN access to find out new functionality and bug fixes. Primary: * https://svn.code.sf.net/p/contools/contools/trunk First mirror: * https://github.com/andry81/contools.git Second mirror: * https://bitbucket.org/andry81/contools.git
Ertha is an open source GIS whose main focus is to guarantee easy extensibility and straightforward integration of custom modules. It provides basic geographic rendering and topologic analysis and exposes the main data structures loaded from shapefiles.
Evoversum is a fast Darwinian evolution simulator. The program simulates a 2D world populated with "animals" which struggle for food, reproduce and may also eat each other. The subject of evolution is their behavior, which may become quite complex. There is an updated video tutorial at http://www.youtube.com/watch?v=nPkZvyVDWJU !
an automated gap closing tool
Development version: https://github.com/pirovc/fgap FGAP aims to improve genome sequences by merging alternative assemblies or incorporating alternative data, analyzing the gap region and indicating the best sequence to close the gap.
A simulator for biological and physiological models
Flint is a simulator for biological and physiological models written in PHML and SBML.
Old project for GS2. Now moved to the gyrokinetics project.
This is the old project for GS2: Gyrokinetic Turbulence Simulator. Low frequency, electromagnetic turbulence occurs in magnetic fusion experiments, astrophysical plasmas, and basic physics experiments. GS2 is a full-featured, portable, parallel code for gyrokinetic simulation.
Home Automation and Control System is a software which can control devices (using pc lpt port) at home from anywhere with any internet enabled device. This software drives a solid state relay by which we can control our home appliances.
Growing suite of proteomics simulations for educational purposes
JBioFramework (JBF) is a set of two different chemical separations simulations (2D Electrophoresis and Mass Spectrometry) that are frequently used in chemistry, biochemistry and proteomics research. It is written in the Java programming language and will run on any and all systems that have the JVM installed. As we continue to develop the software over the coming months/years and attempt to quantify the success of our efforts with testing and reviews, user input is very important. Please don't hesitate to review the software below or email Paul Craig [firstname.lastname@example.org] with larger descriptions/bugs/feature ideas. Our next scheduled release will contain (in addition to 2DE and MassSpec) a 1D Electrophoresis simulation as well as a tab containing ChemAxon's MarvinSketch [http://www.chemaxon.com/products/marvin/] along with some improved functionality. It should be out shortly as we complete the creation and modification of a permanent domain for the project.