The intent is to create a sort of virtual 3D environment representing the exact application state in real time of common Java server application, as web application or client/server application too.
CloudBurst is a parallel read-mapping algorithm optimized for mapping next-generation sequence data to the human genome and other reference genomes, for use in a variety of biological analyses including SNP discovery, genotyping, and personal genomics.
SIRS stands for "Smart Indicators for Reflection Support". SIRS is a framework for developing Indicators on top of sensor networks in web-based and ambient environments for data aggregation, information visualization and context adapation.
Freeways is a FOSS dedicated club The club maintains: Novice projects: a Sudoku game, a snake game Guides: Using opensource software Advanced projects: GEM: a framework to make game development easier. Modelsim clone: an opensource alternative to m
LIGR Assembler is a sequence assembly program. It was derived from TIGR Assembler and addresses some of TIGR Assembler's shortcomings. See the CHANGES file for details.
From project management to general decision making, SWOT is a key tool. Lack of packages (specially Open Source) driven me to create a multiplatform tool, using available, free resources.
An information engineering multi-tool, useful for debugging, security work and other tinkering endeavors. With an open plugin architecture, it can be easily extended to provide hours of fun.
Biospha is a suite of perl scripts based on bioperl toolkit intended to help researches to manage large sequence file. With BIOSPHA you can classify each sequence according to the NCBI taxonomy. You also can get all taxonomic info from a GI or Taxid.
BigRedBin is a web-based tool designed to pre-process metabolomics data generated by a mass spectrometer in an attempt to increase the signal-to-noise ratio. This is accomplished by using information from multiple technical replicates.
The Pi Markup Language (PiML) aims at providing an XML based representation format for the description of models encoded in the Pi Calculus. The XML representation of such Pi Calculus models should support model storage, exchange, and coupling.
This is the software that supports the metagenomics analysis for Dr. Shannon Williamson's Marine Virioplankton project.
A web-based LIMS developed by .NET tech
A Perl object-oriented library for plotting graphs with Gnuplot.
Discovering Candidate Services in XML Process Definition Language (XPDL).
SimRecommender is a modular perl framework to simulate and test attacks on recommender systems. It uses a plug-in architecture to integrate different attacks and recommender algorithms.The development was supported by NSF award IIS-0812042 (see README).
Home Automation and Control System is a software which can control devices (using pc lpt port) at home from anywhere with any internet enabled device. This software drives a solid state relay by which we can control our home appliances.
slclust: a utility that performs single-linkage clustering with the option of applying a Jaccard similarity coefficient to break weakly bound clusters into distinct clusters. The slclust utility is written in ANSI C++.
This is the public repository for the software being developed by the Center for Cancer Computational Biology at the Dana-Farber Cancer Institute.
Harmonize + gene = Harmogene Efficiently create sets of genome annotations ("consensus annotations") from one or more source genomes using simple rules and and apply those annotations to one or more target genomes. See the Trac page for more info.
A Perl script that interfaces with the Devantech USB to I2C interface adapter. This script allows a user to read and write as a master to the i2c bus as well as set or get the value of the io pins.
Algorithm::MatchingModel is a perl library for running match simulations and statistics for two-sided matching problems. It includes classes for a preference factory, algorithm plug-ins, and gathering statistics between rounds.
The Simulation Experiment Description Markup Language (SED-ML) is a formal representation aimed at encoding requirements defined in the MIASE guidelines.
Ramugen is a music application which assists in / automates composition along stochastic/indeterminate lines. Comes as a Win32 desktop application and a Borland Delphi component-package. Open Source : full source-code and documentation provided. Very fle
An ontology comprising of all the rat strains arranged in the OBO format.
This project is result of a challenge "creating a fractals generator by using only C++ and Qt", AiFractals is based on Qt Script and you can enjoy by generating your custom fractals =) by your own algorithms (Qt Script)