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This is a version of XTandem software for MS/MS protein identification ported to Cell BE processor by Sony-Toshiba-IBM used in PS3. Based on original XTandem (Copyright by R. C. Beavis) version 2008.02.01.
This is the public repository for the software being developed by the Center for Cancer Computational Biology at the Dana-Farber Cancer Institute.
WE HAVE MIGRATED TO GITHUB. https://github.com/ebi-chebi/ChEBI
The book shows you how architecting a modern security visibility infrastructure can help your business adapt to new threats, lengthen the usefulness of your current security investments, and optimize uptime and availability. See the entire threat landscape, understand security visibility basics, support both inline and out-of-band security systems, explore security visibility use cases and ask the right questions about visibility.Sponsored Listing
A Perl object-oriented library for plotting graphs with Gnuplot.1 weekly downloads
CloudBurst is a parallel read-mapping algorithm optimized for mapping next-generation sequence data to the human genome and other reference genomes, for use in a variety of biological analyses including SNP discovery, genotyping, and personal genomics.1 weekly downloads
Coati is a web development framework and API for genome databases that supports multiple database vendors and database schemas.
The project will provide a Cocoa framework to interface OpenGL in a more OO-fashioned style. It is not meant to be the fastest code possible, nor to leverage all the power of OpenGL, but to give developers a easy way to start working in 3D
Numerically estimate an efficiency of code construction algorithms. Randomly generate n binary words of length m with minimum Hamming distance d and create a prefix code (= retrieval tree) from them. Based on PhD work.
ThousandEyes extends visibility across corporate networks as well as the public Internet, helping to solve issues from the branch through MPLS links and SIP trunks to service provider networks. Simulate pre-deployment capacity, monitor detailed performance metrics and see how QoS settings impact call quality.Sponsored Listing
A collection of Perl modules and programs for bioinformatics. Design intention is to make most common, straight-forward tasks in computational biology as simple, and portable, as possible.3 weekly downloads
The Comprehensive Microbial Resource (CMR) is a free website used to display information on all of the publicly available, complete prokaryotic genomes.
Our mission is to organize educational materials that have teacher information, exercises, and open source software linked on site. We aim at verfied, validated, and accredited materials, whether software or hardcopy.
CrystalEye is a repository system for collecting Crystallographic dadta anbd processing it so that it can be usefully browsed, searched and harvested.
DAGchainer identifies chains of gene pairs sharing conserved order between genomic regions, by identifying paths through a directed acyclic graph (DAG).3 weekly downloads
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Is an Open Source Uchrony, analyzing information in the nexus dimension. From Hong Kong to Siberia, this first book is the starting point of an utopia in direct reference to History, evolving within a complex 5-degree social network.1 weekly downloads
A Perl script that interfaces with the Devantech USB to I2C interface adapter. This script allows a user to read and write as a master to the i2c bus as well as set or get the value of the io pins.
Diabetes Management System (DMS) was designed to easily let you track: Bolus amounts, Generic Shots, Carbs, Exercise, and many other aspects of the diabetes lifestyle.
Testcalc is a CGI-based calculator for diagnostic test characteristics written in Perl that displays results both numerically and graphically.1 weekly downloads
The Disease Ontology has moved to Github. New project page: https://github.com/DiseaseOntology Disease Ontology is a stuctured controlled vocabulary originally based upon and mapped to medical billing codes. The goal of this ontology is to create a comprehensive hierachical controlled vocabulary to represent subsumptive disease relationships.1 weekly downloads
Utilize Java to create an application capable of massivly parallel operations. Application will be targeted as a Napster Clone, with the additional capability of downloading projects which are seeking computer time.2 weekly downloads
EMBOSS explorer is a web-based graphical user interface to the EMBOSS suite of bioinformatics tools. It is written in Perl and is exceedingly simple to install, configure, maintain and use.1 weekly downloads
EVidenceModeler (aka EVM) combines ab initio gene predictions and spliced protein and transcript alignments into weighted consensus gene structure predictions.1 weekly downloads
Encode Arabic provides tools for encoding and decoding Arabic in Haskell, Python, Perl, or LaTeX. Interprets the ArabTeX notation to generate original orthography or phonetic transcription. Supports Buckwalter and other romanizations. Converts legacy byte encodings into Unicode. http://github.com/otakar-smrz/encode-arabic
Time Travel is possible
Evolvica is a Java framework for development of and experimentation with evolutionary algorithms. It is based on the Eclipse platform and includes a visual editor for algorithms and genetic operators.
Java package to study a clustering model described in the paper \"Novel Clustering Algorithm Based Upon Games on Evolving Network\" by Q. Li, Z. Chen, Y. He and J-P. Jiang (in arxiv: http://arxiv.org/pdf/0812.5064v1), generalizations and similar issues.1 weekly downloads