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This project contains the software for extracting bioinformatics data (sequences, features and annotations) from TIGR's legacy schemas as well as support for efficiently loading data into chado from BSML.
The target of the Prometheus project is to provide a three-dimensional web interface usable for End User Computing and Role Playing Games as a open source software solution.
An open source toolbox for protein-protein docking with internal backbone flexibility that can be executed on GPU cards, using PyMOL molecular viewer for user interface. Implemented in CUDA with the eventual transition into OpenCL.
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Python based binding for Data Acquisition from Data acquisition hardwares. with this one can access hardware just like c++ inportb() and outportb() and extra stuff..
PySOS, a python-based implementation of the OGC SOS standard. PySOS is a lightweight set of scripts that work in conjunction with a web server to serve data from a relational database.
a computer role playing game system
The goal of RNAO is to create a common, dynamic, controlled vocabulary (the RO), pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures.
physicslib:- A library of rigid body physics routines and demos, designed for use in VR and entertainment applications. With tutorial style documentation intended to explain the concepts used in the code.
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ReqSimile is an application that supports and facilitates linking and merging between requirements specifications written in plain text. The underlying similarity calculations are based on the latest research in the field.
RmiR is an R package for the analysis of microRNA and gene expression microarrays. The package is designed to coupling microRNA and gene expression data, using different databases, like TargetScan, mirBase, picTar,TarBase and others...
Purpose of SAWS is to facilitate process of web scraping by - 1) providing a pattern specification mechanism on top of normal regular expressions 2) and implementation of common matching algorithm to run specified pattern on given source for any matches.
SENECA is a program package for Computer Assisted Structure Elucidation (CASE) of organic molecules. While it currently uses mainly 1D and 2D NMR spectroscopy for the CASE process it is open to all types of spectroscopic data.
SIRS stands for "Smart Indicators for Reflection Support". SIRS is a framework for developing Indicators on top of sensor networks in web-based and ambient environments for data aggregation, information visualization and context adapation.
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A set of Matlab and Scilab scripts to build analog filters.
SOESA - Structure Optimization and Evaluation using Separations of Atoms Software for refining low-resolution protein crystal structure or NMR models using atomic distance restraints obtained from a database of known structures.
SPECTRa is a suite of tools that make it easier to get chemistry data into Open Data repositories.
An information engineering multi-tool, useful for debugging, security work and other tinkering endeavors. With an open plugin architecture, it can be easily extended to provide hours of fun.
The Semantic Server is a Python-based set of tools that allow for better management, analysis, and integration with other systems. It uses the A.L.I.C.E. chatbot technology by Dr. Richard Wallace.
SimRecommender is a modular perl framework to simulate and test attacks on recommender systems. It uses a plug-in architecture to integrate different attacks and recommender algorithms.The development was supported by NSF award IIS-0812042 (see README).
An efficient 2D Simple Graphing program for windows, perfect for plotting collected data incorporating features of cricket graph which allow you to apply a function to all your data. Regression Lines for data.
The Simulation Experiment Description Markup Language (SED-ML) is a formal representation aimed at encoding requirements defined in the MIASE guidelines.
A prolog-based functional-logical "Make" tool for managing the execution of complex interdependent tasks
SpOK - The Spectrum Organisation Kit, a program for the organisation and visualisation of spectral data written in Java. Sorry - this project is not being continued. All functionality was integrated into the Bioclipse project...
Spy is a Mac OS X menu extra displaying inportant info about your computer (CPU, Network, Disk and Memory usage)
StarMap 3D: the project aims to offer a fast and easy consultation of stellar systems