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One of the leading short-/long-read aligner to large genomes3 weekly downloads
CUSHAW3 is an open-source parallelized, sensitive and accurate short-read aligner. This aligner proposes a general approach to properly aligning both easy and hard reads to large genomes such as the human genome. Perform evaluation on alignment quality reals that CUSHAW3 consistently outperforms CUSHAW2, BWA-MEM, Bowtie2 and GEM in terms of single-end and paired-end alignment. Furthermore, our aligner has demonstrated better paired-end alignment performance than Novalign3 for short-reads with high error rates.8 weekly downloads
the first aligner introducing a complete paired-end alignment on GPUs
The calendar algebra is a formal representation that captures the semantics of relationships between granularities of time. The software in this project serves as a basis for storing and converting time granularities defined by the calendar algebra.
Carbon Effective Supply Chain Simulator (CESCS) is a software package for simulating green supply chain. A unique approach is taken to help achieve the optimal balance between carbon footprint, supply chain cost, service level, and product quality.
Framework based on standards to build Science Gateways1 weekly downloads
Cerebrum intends to be a state of the art web 2.0 Electronic health record management solution.
Channel Usability Analytics using UIMA (Unstructured Information Management Architecture) that does things like analyze the user behavioral patterns in the channels followed by webserver-users.
UIMA solution for analysing web-server logs, that does things like analyze the user behavioral patterns in the channels followed by users from the log files, report current and the past behaviour of the visitors in selfservice systems.
ChemClipse Third Party Libraries
ChromEval allows rapid assessment of HPLC performance using visual and quantitative metrics for quality control runs interspersed among a regular LC-MS workflow.
A category-based approach to exploring film data.
Android app to monitor a Midnite Solar Classic charge controller3 weekly downloads
ClimateTrends is an information and analysis tool on global climate change developed by the World Resources Institute. ClimateTrends provides a comprehensive and comparable database of greenhouse gas emissions data.
Detector of clinical evidence
A research corpus for knowledge representation and reasoning, with problems drawn from the domain of history.
Find the best suited cloud provider and deployment for your software9 weekly downloads
Intelligent typewriter with search interface for extern systems.
Comprehensive Meta Prediction and Annotation Services for Proteins: The new all-in-one prediction tool that can be easily extended to include any SOAP/WSDL-enabled prediction servers. A concise user interface lets you use the results instantly.
PHP based code repository with syntax highlighting.
Cog-Trust implements a cognitive theory of trust for social agents. It includes a testbed for testing and protopying hybrid agents. Deliberative modules are coupled to classifiers and cognitive maps, used for the assesment of trust and delegation.
A framework for building, deploying and managing well-described REST-ful Web services, including REST-ful Web Services realizations for RSS, XML Topic Maps, Structured Arguments, and Workflow.
Comet open source tandem mass spectrometry (MS/MS) search engine.12 weekly downloads
The Complete Genomics Analysis Tools is an open source project to provide tools to simplify analysis of genomics data produced by Complete Genomics.9 weekly downloads
Contextor is a light-weight simple-to-use Java based library to help developers and researchers working with the general concept of a resource; as examples, resources can be text resources, web resources, images and videos.1 weekly downloads