FreeImage is a library project for developers who would like to support popular graphics image formats (PNG, JPEG, TIFF, BMP and others). Some highlights are: extremely simple in use, not limited to the local PC (unique FreeImageIO) and Plugin driven!
SUMO is a microscopic road traffic simulation.
SUMO is an open source, highly portable, microscopic and continuous road traffic simulation package designed to handle large road networks. It allows for intermodal simulation including pedestrians and comes with a large set of tools for scenario creation. Please note that code and issue tracker are now at https://github.com/DLR-TS/sumo/
DXF2GCODE: converting 2D dxf drawings to CNC machine compatible G-Code
DXF2GCODE is a tool for converting 2D (dxf, pdf, ps) drawings to CNC machine compatible GCode. Windows, Linux, and Mac support by using python scripting language.
Open Source CAM - Toolpath Generation for 3-Axis CNC machining
BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. A standalone signal viewer supporting more than 30 different data formats is also provided.
TANGO is a device oriented control system for Linux and Windows. It provides a framework in C++, Java and Python for implementing distributed control objects. TANGO has a full set of tools and hundreds of device servers.
A cross platform Python frequency scanning GUI for rtl-sdr
A cross platform Python frequency scanning GUI for USB TV dongles, using the OsmoSDR rtl-sdr library. In other words a cheap, simple Spectrum Analyser. More information can be found at: http://eartoearoak.com/software/rtlsdr-scanner An installer and standalone versions for Windows are located here: https://github.com/EarToEarOak/RTLSDR-Scanner/releases Sources are available on GitHub: https://github.com/EarToEarOak/RTLSDR-Scanner ** The up to date installer is no longer maintained on this site and can now be found at https://github.com/EarToEarOak/RTLSDR-Scanner/releases **
Generating cells for electronic structure calculations from CIF files
CIF2Cell is a tool to generate the geometrical setup for various electronic structure codes from a CIF (Crystallographic Information Framework) file. The program currently supports output for a number of popular electronic structure programs, including ABINIT, ASE, CASTEP, CP2K, CPMD, CRYSTAL09, Elk, EMTO, Exciting, Fleur, FHI-aims, Hutsepot, MOPAC, Quantum Espresso, RSPt, Siesta, SPR-KKR, VASP. Also exports some related formats like .coo, .cfg and .xyz-files. The program has been published in Computer Physics Communications 182 (2011) 1183–1186. Please cite generously.
Machine Learning Python
mlpy is a Python module for Machine Learning built on top of NumPy/SciPy and of GSL. mlpy provides high-level functions and classes allowing, with few lines of code, the design of rich workflows for classification, regression, clustering and feature selection. mlpy is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License version 3. mlpy is available both for Python >=2.6 and Python 3.X.
Mantid Project (www.mantidproject.org)
Somatic fusion-genes finder for RNA-seq data
FusionCatcher searches for novel/known somatic fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa and HiSeq) from diseased samples. The aims of FusionCatcher are: - very good detection rate for finding candidate fusion genes, - very easy to use (i.e. no a priori knowledge of databases and bioinformatics is needed in order to run FusionCatcher), - very good detection of challenging fusion genes, like for example IGH fusions, CIC fusions, DUX4 fusions, CRLF2 fusions, TCF3 fusions, etc. - to be as automatic as possible (i.e. the FusionCatcher will choose automatically the best parameters in order to find candidate fusion genes, e.g. finding automatically the adapters, building the exon-exon junctions automatically based on the length of the input reads, etc.) while providing the best possible detection rate for finding fusion genes.
a free and open map of wireless communicating objects
openBmap collects data and provides open maps and statistics of all communicating objects: cellular antennas, wifi hotspots. All softwares from back-end to client are open-source under AGPL v3 license.
Ctrax is a machine vision program for estimating the positions and orientations of many walking fruit flies, maintaining their individual identities over long periods of time with minimal supervision, and on average for 1.5 fly-hours automatically.
ffnet is a fast and easy-to-use feed-forward neural network training solution for python. Many nice features are implemented: arbitrary network connectivity, automatic data normalization, very efficient training tools, network export to fortran code. Now ffnet has also a GUI called ffnetui.
Building automation (like KNX or OpenHAB) software (like CometVisu).
This project aims to provide software usefull in automation tasks like building automation. Different backends are supported like KNX or OpenHAB. Note: The project has moved to GitHub. Please consult: https://github.com/CometVisu/CometVisu - for the CometVisu https://github.com/OpenAutomationProject - for the different OpenAutomation subprojects
syphon is an extension for mod_openopc, to monitor telnet devices (serial devices) that sit on Serial -to- Ethernet bridges (such as barcode scanners) and export parsed data to an OPC compliant device (such as a PLC).
A python gear generator that serves as CAE/CAD-preprocessor for involute gears based on pythonOCC. It allows for the computation of dynamic properties and the creation of exact geometries from a minimal input set.
Homepage for CoNIFER (Copy Number Inference From Exome Reads)
CoNIFER uses exome sequencing data to find copy number variants (CNVs) and genotype the copy-number of duplicated genes.
Python GUI program to work with Geiger counters like GMC-300/320/500
GeigerLog is a Python based GUI program to work with GQ Electronic's GMC-300 / 320 and now also GMC-500 Geiger counters. Available as "scripts" to run where a proper Python environment exists, or as "bundle", which brings its own Python environment (but currently runs on Linux only). GeigerLog allows reading of Geiger counter data, logging to file, printing to screen and plotting as graph, showing Count Rate vs. Time, both in various, selectable units. The history stored on the Geiger counter's internal memory can be extracted, analyzed and graphed in the same way. The graph is live auto-updated and allows various customization. Time ranges for analysis can be set manually or per left/right mouse click. GeigerLog can control some functions of a connected counter (limited to GMC-3xx counters!). Advanced analysis of the data now permits count rate histograms with Poisson fit for quality control of data, and FFT analysis for any periodic signal hidden within the data.
ViTables, a GUI for PyTables
A bioinformatics pipeline to analyze mtDNA from NGS data
MToolBox is a highly automated bioinformatics pipeline to reconstruct and analyze human mitochondrial DNA from high throughput sequencing data. MToolBox includes an updated computational strategy to assemble mitochondrial genomes from Whole Exome and/or Genome Sequencing (PMID: 22669646) and an improved fragment-classify tool (PMID:22139932) for haplogroup assignment, functional and prioritization analysis of mitochondrial variants. MToolBox provides pathogenicity scores, profiles of genome variability and disease-associations for mitochondrial variants. MToolBox provides also a Variant Call Format file (version 4.0) featuring, for the first time, allele-specific heteroplasmy. Please, check out the most recent updates of the source code with the Github repository of MToolBox: https://github.com/mitoNGS/MToolBox or visit the Web version of MToolBox @ MSeqDR: https://mseqdr.org/mtoolbox.php
A set of very optimized tools for indexing/querying huge genomes/files. Provided so far: a very fast exact mapper, and an unconstrained split-mapper
Object-oriented equation-based modelling and optimisation software
DAE Tools is a cross-platform equation-based object-oriented modelling, simulation and optimisation software. It is not a modelling language nor a collection of numerical libraries but rather a higher level structure – an architectural design of interdependent software components providing an API for: - Model development/specification - Activities on developed models, such as simulation, optimisation, sensitivity analysis and parameter estimation - Processing of the results, such as plotting and exporting to various file formats - Report generation - Code generation, co-simulation and model exchange The following class of problems can be solved by DAE Tools: - Initial value problems of implicit form - Index-1 DAE systems - With lumped or distributed parameters - Steady-state or dynamic - Continuous with some elements of event-driven systems
Molecular dynamics by NMR data analysis
The software package 'relax' is designed for the study of molecular dynamics through the analysis of experimental NMR data. Organic molecules, proteins, RNA, DNA, sugars, and other biomolecules are all supported. It supports exponential curve fitting for the calculation of the R1 and R2 relaxation rates, calculation of the NOE, reduced spectral density mapping, the Lipari and Szabo model-free analysis, study of domain motions via the N-state model and frame order dynamics theories using anisotropic NMR parameters such as RDCs and PCSs, the investigation of stereochemistry in dynamic ensembles, and the analysis of relaxation dispersion data.
Modbus TCP / Modbus RTU library for Python Implementations
Welcome to the Python implementation of Modbus Protocol. Including a Modbus Client Application Support of Function codes: FC1: Read Coils FC2: Read Discrete Inputs FC3: Read Holding Registers FC4: Read Input Registers FC5: Write Single Coil FC6: Write Single Register FC15: Write Multiple Coils FC16: Write Multiple Registers V2.4: Modbus Client Testapplication supports Read and Write operations Functions to Convert Real and Long values sent or received via Modbus V2.3: Bugfix StartingAddress EasyModbusTCP library is available for .NET / Java / and Python. Same Handling for different implementations and different plattforms. Requerements: Python3 interpreter PySerial package