Scientific/Engineering Software

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Scientific/Engineering Software

  • Pyramid - The Complete Self-Service Analytics Platform Pyramid - The Complete Self-Service Analytics Platform Icon
    Pyramid - The Complete Self-Service Analytics Platform Icon

    Easily combine data from multiple sources to build dashboards and reports with our scalable solution built for mid-size to enterprise companies.

    Pyramid combines analytic tools often found in separate applications. It features a graphically based ETL to model data and incorporate machine learning algorithms, intuitive data discovery tools that produce simple and advanced visualizations, a presentation builder for creating analytic applications and presentations, and an enterprise-grade report builder—all in a single, integrated platform that can be accessed from any browser or device.
  • 2018 Network Intelligence Planning Guide 2018 Network Intelligence Planning Guide Icon
    2018 Network Intelligence Planning Guide Icon

    Get insights on net neutrality, cloud readiness, security and WAN transformation.

    Networking is becoming cloudier, hybrid and more Internet-centric. IT managers now own user experience, whether they own the networks or not. Get our latest ebook to learn how network intelligence will help you adapt to a quickly changing Internet-centric environment.
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  • Benetech Human Rights Program Util Lib

    Benetech Human Rights Program Utility Library: Collection of utilities used by the Benetech Human Rights programming for processing human rights data in preparation for statistical analysis. Library handles DSV files, name canonicalization, binarray, et

  • Modelica Library Flow Chart Generator

    ModelicaFloChrt is a script/Perl process that extracts information from Modelica library html help files and generates flow charts of module connectivity in eps and pdf formats.

    Downloads: 0 This Week Last Update: See Project
  • CoDeCZ Icon

    CoDeCZ

    Derive copy number status from targeted sequencing data

    CoDeCZ derives copy number state from targeted sequencing data on gene or exon level. Results are NOT true copy number however, but they are semi-quantitative: It uses the modified z-score to calculate deviation in normalized coverage per specified region. The higher the Z-score, the higher the copy number. The final z-score depends on the quality of the data and the makeup of the reference pool.

    Downloads: 0 This Week Last Update: See Project
  • bspipe

    An End-to-End Analysis Pipeline for BS-seq

    BSpipe is a comprehensive pipeline from sequence quality control and mapping to functional analysis of differentially methylated regions: (1) sequencing quality assessment, (2) sequence cleaning, (3) sequence read mapping, (4) methylation quantification, (4) sample comparisons based on methylation profile, (5) identification of DMRs (differentially methylated regions), (6) annotation of DMRs, (7) functional analysis of differentially methylated genes, (8) generation of input files for visualization, and (9) support for advanced sequencing technologies such as TAB-seq, OxBS-seq, MAP-it, and NOMe-seq.

    Downloads: 0 This Week Last Update: See Project
  • Technoforge Open Hardware Dev Suite

    TechnoForge aims to be a website operated for the purpose of fostering hardware development and technical documentation creation under Open-Source Initiative -approved licenses or other arrangements relating to hardwware and/or documentation development.

    Downloads: 0 This Week Last Update: See Project
  • Monitor your Cisco ASA like an expert with Solarwinds® Network Insight™ for Cisco® ASA, a feature of NPM and NCM. Monitor your Cisco ASA like an expert with Solarwinds® Network Insight™ for Cisco® ASA, a feature of NPM and NCM. Icon
    • Get visibility into the health and performance of your entire Cisco ASA environment in a single dashboard
    • View VPN tunnel status and monitoring firewall high availability, health, and readiness
  • S2E

    This project is for particle accelerator start-to-end simulation. The project contains software infrastructure for setting up model run as service/client mode.

  • TrimAl

    TrimAl is a bioinformatic tool that cleans multiple protein or nucleotide sequence alignment. The clean alignment (as a result of the TrimAl cleaning process) is used for phylogenetic reconstruction. TrimAl improves the quality of the reconstructed trees

    Downloads: 0 This Week Last Update: See Project
  • FFP-Feature Frequency Profile Phylogeny

    FFP (Feature frequency profile) is an alignment free comparison tool for phylogenetic analysis and text comparison. It can be applied to nucleotide sequences, complete genomes, proteomes and even used for text comparison.

    Downloads: 3 This Week Last Update: See Project
  • NIKS

    NIKS (Needle in a K-stack) - detection of mutations in NGS data

    To get access to the code, please check it out with svn as described in the code section.

  • Boolean Expression Solver

    Boolean Expression Solver is a command-line utility that generates a truth table for a given Boolean expression.

    Downloads: 3 This Week Last Update: See Project
  • Want to improve your MSP’s revenue? Price your services right. Want to improve your MSP’s revenue? Price your services right. Icon
    Want to improve your MSP’s revenue? Price your services right. Icon

    Get the ebook, The Managed Services Pricing Guide 2.0 to get industry best practices on pricing managed services.

    You choose software for your IT business so it makes you money. The margins must be good enough to justify the cost. SolarWinds RMM was priced to give you the margins you need to earn a healthy amount of monthly recurring revenue. Download our all-new Managed Services Pricing Guide 2.0 to find what revenue to expect for your services, including light monitoring, web protection, patching management, backup and more.
  • RRDtool tutorial

    Very basic RRDtool tutorial. It is an example in that way. It can save you a couple of days of discovering on your own. In any case you have to read the manual _before_ that ;)

    Downloads: 0 This Week Last Update: See Project
  • S-integrator

    A service-oriented, single-source, Java integration server with virtual Service Stores(TM) that expose services via web services, HTTP and more. Service Flows provide process automation. Mainframe, database, email, web, soap & ftp adapters are included.

    Downloads: 0 This Week Last Update: See Project
  • AutoShim

    Tools to build molecular-docking activity prediction models by PLS regression with iterative training and pose-selection. Descriptors include (i) docking score(s), (ii) pharmacophore features, (iii) multi-feature descriptors learned by decision trees.

    Downloads: 0 This Week Last Update: See Project
  • CTAS

    CTAS package is a set of tools for the Computed Tomography (CT) and Tomosynthesis (TS) reconstruction for the parallel beam geometry (usually available at the synchrotron sources).

    Downloads: 0 This Week Last Update: See Project
  • c++ code:radar,signalprocessing,plots..

    miscelaneous c++ code, scripts, commands, in matters as radar, signal processing, realtime gnuplot, 2D/3D graphics

    Downloads: 11 This Week Last Update: See Project
  • Command Line Office

    Command Line Office (Console Office) a collection of tools (shell scripts) providing a range of every-day's tasks to be conveniently performed on the command line, like email, file, document, dictionary lookup (many with colored highlighting features)

    Downloads: 0 This Week Last Update: See Project
  • pipestatus for UNIX/POSIX shell

    pipestatus - source file for UNIX/POSIX shell that allows to obtain an exit status of every program in a pipe.

    Downloads: 7 This Week Last Update: See Project
  • Climate Diagnostics Suite (CDS)

    CDS plots and analyzes output from numerical climate models. It is capable of comparing climate model simulations and/or observational data. It consists mostly of a series of MathWorks Matlab language scripts and reads data in NetCDF format.

    Downloads: 0 This Week Last Update: See Project
  • ND QSAR

    Chemiinformatics: ND qsar -- dimensions involved in biological activity are more than the tree dimensions our mind can easily perceive.

    Downloads: 0 This Week Last Update: See Project
  • cloudFlu Icon

    cloudFlu

    HPC cloud computing for OpenFOAM (R) users

    Downloads: 1 This Week Last Update: See Project
  • MyOrfeome

    Bioinformatic tools for analyzing an orfeome using translated ORFs and compares each ORF to the provided Orfeome/Proteome. Our script uses NCBI BLAST run locally and MySQL as the main engines in a new and interisting way. It is designed specifically for Poxvirus genomes, and provides the VACV-COP nomenclature and Cowpox Ortholog groups per each ORF. The BLAST stats are generated when compared to the Proteome you provide. It can be easily adapted for other genomes.

    Downloads: 0 This Week Last Update: See Project
  • IMEP-Spice interface Icon

    IMEP-Spice interface

    The developed graphical interface is based on the SKILL language which is a Lisp dialect used as a scripting language and PCell (Parameterized Cells) description language used in many EDA software suites by Cadence Design Systems.

    Downloads: 2 This Week Last Update: See Project
  • Gschem-finalizer

    Integrator for gEDA (GPL EDA) Suites & Bridge gEDA to Kicad

    Gschem-finalizer is free & open source EDA-tool to finalize gEDA-gschem schematic project. It integrates several programs such gEDA (gschem, gnetlist, and NG-SPICE), GNU a2ps, psutils, and some basic GNU/Linux or UNIX programs. This software is written based PHP language & running on GNU/LINUX OS variants & UNIX OS variants. Features: 1. Generate netlists (SPICE 3F5, GEDA PCB, Kicad PCB/EESchema) 2. Pre-testing (additional DRC) 3. Result multi-pages in single file PDF output compilation with operating point description. 4. "Smartly" generate SPICE netlist for analog, digital, or mixed analysis simulation. 5. Generate Kicad netlist from gEDA schematic format. & More... See the manual for more info (http://gschemfinalizer.sourceforge.net/) The example of results are available at http://sourceforge.net/projects/matrix14freeamp/files/

    Downloads: 3 This Week Last Update: See Project
  • ChesROMS

    ChesROMS is developing a ROMS model of the Chesapeake Bay to help in the prediction of Harmful Algal Blooms. We hope to catalyze a new method of community modeling with involvement beyond the core researchers of the ChesROMS project.

    Downloads: 0 This Week Last Update: See Project
  • parastructure

    parastructure is a perl script collection to run the population genetics software STRUCTURE from Pritchard et al. 2000 (http://pritch.bsd.uchicago.edu/structure.html) in parallel on a cluster (beowulf type). Each run of K (the number of populations) is executed separately on each CPU of the cluster trough queue system based on PBS. A summary statistics table and distruct figures (Noah Rosenberg: http://www.stanford.edu/group/rosenberglab/distruct.html) are built at the end of the run. A patch for the structure (ran.c) is also provided in order to correct the generation of the seed number.

    Downloads: 0 This Week Last Update: See Project

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