a collection of useful bash functions
bashacks is a collection of bash functions to increase productivity while hacking with bash. There are functions for number converting, string encription and more.
A toolkit for language modeling.
IRSTLM is no more supported on SourceForge. Please visit the new IRSTLM official website: http://hlt-mt.fbk.eu/technologies/irstlm IRSTLM: A tool for the estimation, representation, and computation of statistical language models. IRSTLM, the IRST Language Modeling Toolkit, features algorithms and data structures suitable to estimate, store, and access very large n-gram language models. Our software has been integrated into a popular open source Statistical Machine Translation decoder called Moses, and is compatible with language models created with other tools, such as the SRILM Tooolkit.
Antenna Measurement Range Using LinuxCNC
Enhanced Machine Controller-based Antenna Range (EMCAR) EMCAR employs LinuxCNC based machine control (linuxcnc.org) coupled with open source software to implement a measurement system for antenna radiation pattern data (i.e. an antenna range).
MARF is a general cross-platform framework with a collection of algorithms for audio (voice, speech, and sound) and natural language text analysis and recognition along with sample applications (identification, NLP, etc.) of its use, implemented in Java.
The aim of this project is the development of a flexible, multi-user, virtualization-enabled network emulator, using a cluster of general purpose (x86) machines. The emulator interface is web-based and uses the AJAX pattern.
A bioinformatics project to create tutorials, including programming code examples, to help in bioinformatics training. Will primarily create examples with Perl, PostgreSQL, R, Bioperl, Emboss. Part of Comparative and Collaborative Bioinformatics Project.
Bioinformatics Artificial Intelligence Order
A smart interface of AI that will interrogate and complete your bioinformatics data analysis for you. Download and start your instance of BAIO to join the network of great bioinformatics Minds.
ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW. ADOMA is a commandline program that can easily be used in pipelines. For more information check the README.md in the Files section. How to cite ADOMA: Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083 http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract
THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit/
THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit/ The Multiword Expressions toolkit aids in the automatic identification and extraction of multiword units in running text. These include idioms (kick the bucket), noun compounds (cable car), phrasal verbs (take off, give up), etc. Even though it focuses on multiword expresisons, the framework is quite complete and can also be useful in any corpus-based study in computational linguistics. The mwetoolkit can be applied to virtually any text collection, language, and MWE type. It is a command-line tool written mostly in Python. Its development started in 2010 as a PhD thesis but the project keeps active (see the SVN logs). Up-to-date documentation and details about the tool can be found on the mwetoolkit website: http://mwetoolkit.sourceforge.net/
spinal cord DTI pre-processing
Shell script for spinal cord diffusion tensor imaging (DTI) preprocessing and outlier rejection.
A collection of tools used in the enumeration of solution spaces
This collection of tools forms the basis of a pipeline for the complete enumeration of the number of solutions present in a model that maximizes a single objective function.
Programa para automatizar la creación artículos en Wikipedia en español sobre objetos astronómicos del catálogo NGC. Rellena los campos automáticamente a partir de diversas bases de datos en línea, generando un código base sobre el que trabaj
Web Assisted Teaching Environment. Software system for creating, updating, distributing, and reusing Electronic Teaching Resources, (particularly Multiple Choices Quizzes).
OpenSearch GeoSpatial Catalogue
Diccionarios en Español para Venezuela
Migrado a GithUB EN: https://github.com/christiangda/es-ve La mejor opción para verificar y corregir la gramática de tus documentos de LibreOffice escritos en español. La extensión incluye: Corrector Ortográfico, Tesauro de Sinónimos y Separación Silábica. ¡Hecho en Venezuela! Sus principales características son: Más DE 87.000 lemas y sus respectivas conjugaciones. Contiene el Lemario actualizado de RAE (Real Academia Española) Términos financieros e informáticos aceptados por RAE Nombres de Países, sus abreviaciones y capitales Contiene el Lemario actualizado NoRAE (Que no se encuentran en la Real Academia Española y son muy utilizados) Nombres de la División Político Territorial Venezolana(Estados, Municipios y Parroquias) Nombres de las capitales de Estados y sus
A Interactive Network VideoGame
Simple small tools for bioinformatics written in bash perl and python
This is a small project providing simple yet useful scripts for miscellaneous bioinformatics tasks. Powered by the BioInfX team of the Department of Genetics and Molecular Biology of the Center for Research and Advanced Studies of the National Polytechnic Institute of Mexico.
The phpMyRSSBot Web Application is an Open Source community-based, submission-based, RSS Web Crawler/Bot, RSS Search Engine, Bookmark Manager, and RSS Reader, all in one. Requirements: Linux, Cron, Apache, MySQL5, PHP5/PEAR, and XML. Coming Soon!
SIPeS - Site Identification from Paired-end Sequencing
This library provides an Opensource ATPG API to build your programs on. The library implements a lot of template c++ classes and functions that provide Combitional/Sequential logic simulation, and fault simulation functionality(semi-PROOFS).
Shell-scripts for the conversion & visualization of time series in raw MBDyn-ASCII-output format resulting from MBDyn multi-body-system simulations . Forms a minimalistic interface to make post-processing of MBDyn-bulk-data easier and more comfortable.
Matlab routines for analyzing data
An SQL handler to interface multiple databases data to the OpeNDAP Hyrax (BES) server. Written in C++, it uses unixODBC to query DB and can be dynamically extended to use proprietary ODBC API driver in many easy ways. It is bundled with scripts to ge
ctraj: the C++ trajectory library
Libraries for integration of atmospheric trajectories. Includes a basic trajectory integrator, contour advection codes and semi-Lagrangian tracer simulations.
Rapidly identify orthologous cDNA sequences in related species
OrthoRBH is a tool/pipeline designed to identify families of protein coding transcripts/genes in related species using a reciprocal blast method. It can search through databases of full-length cDNAs, ESTs or mRNA-seq data. Optional assembly of candidate sequences allows assembly of contigs. It is suited to handling a mixture of EST and mRNA-seq sequence data. It performs batch blast searches, so it is ideal for large multi-gene families. After collecting candidate sequences, it performs sequence alignment and deposits sequences into a fasta sequence file for downstream molecular evolutionary analysis.