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NIKS (Needle in a K-stack) - detection of mutations in NGS data
Unix-based preparation and analysis toolbox for molecular simulations
The aim of this project is the development of a flexible, multi-user, virtualization-enabled network emulator, using a cluster of general purpose (x86) machines. The emulator interface is web-based and uses the AJAX pattern.
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An intelligent, web-crawling agent that builds invariant representations of data collected.
Network Programming Interface Builder Create a rapid application development tool that researchers could easily use to create, maintain, and archive numerous parametric studies based on their computer simulation programs.
superseded by SgpDec http://sgpdec.sf.net Java implementation of the holonomy algorithm for the algebraic hierarchical decomposition of finite state automata.
Development and support of OCFA have been discontinued. the code has moved to these github repositories: https://github.com/DNPA/OcfaLib https://github.com/DNPA/OcfaArch https://github.com/DNPA/OcfaJavaLib https://github.com/DNPA/OcfaModules https://github.com/DNPA/OcfaDoc If you are interested in contributing to ongoing work on the creation of a community maintained OCFA inspired computer forensic framework, please join the Mattock/MattockFS community page on G+: https://plus.google.com/communities/102487198908055860744
The Pawn will make it possibly for you to tell the computer exactly what you would like it to do. Fiction. No its reality now. The highly customizable slackware will be the base for Pawn.
Instant access to free mathematical software and textbooks
Rapidly identify orthologous cDNA sequences in related species
PAIC is an AI system designed for a simpler (and easier) approach to AI and Artifical Neural Interfaces.
PODWG is a Wallpaper Generator from various "Picture Of the Day" sources such as NASA's "Astronomy Picture Of the Day".
Post-Transcriptional Exon Shuffling (PTES) Identification Pipeline
Command-line nutrition program to track your food intake and analyze recipes
The Parallel Seismic Earth Imaging System (PSEIS) is designed for geophysical research and parallel processing of large datasets. Interoperation and emulation are used to leverage other seismic processing software, existing skills and infrastructure.
Software tools facilitating the task of surveying architecture (real-time control, parametric modelling, use of digital photographs, processing of point clouds...). Until now, those tools were mainly used to document cultural heritage sites/buildings
Polymer simulation utilites
ProgPorts is an administrative and easy user interface to hundreds of proteomics, molecular dynamics, and protein crystallography programs. It is a hybrid of the prog/setup system, developed at Johns Hopkins University, and GNU-Darwin ports system.
A project to make an Open Source Artificial Intelligence program.
Prediction of PROTtein Preferred Orientation on a Surface
This project implements an algorithm for segmenting protein sequences into smaller meaningful blocks. The method is based on the pure statistical approach and it uses an analogy between proteins and natural language.
PulsarHunter is a java based package for pulsar searching. It operates on a number of standard data formats. This package also includes the JReaper graphical candidate selection tool.
QAXA is a suite of programs for Quantative Analysis of X-ray Absorption. It was developed for experimental measurement of multiphase flow in porous media but it can be used for many applications involving x-ray absorption spectroscopy.
Viral Quasispecies Reconstruction software based on QSdpR algorithm
QUASI is a toolkit to rapidly assess the quality of shRNA-Seq based data and call differential abundance using common statistical inference methods (DESeq, edgeR, baySeq).