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Differential activE sub-Network (DEN): R/Bioconductor based package
Java Swing based GUI for R statistical language
The Dataverse Network is a Java EE5 app that enables researchers to share data on-line. It provides data citation standards, facilitates preservation, distribution and replication of data, and includes statistical analysis. More at: http://thedata.org
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Analyze time-course data with significance tests, clustering, modeling
DetectiV is an R package for the analysis of pathogen detection microarrays
DEW is a platform that allows users to explore RNA-Seq data
Django-dataplot enables developers using the Django web framework to seamlessly integrate data-driven graphical plots into their web pages.
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DuffyRNAseq is an R package that implements an analysis pipeline for processing RNA-seq data from Illumina NextGen sequencers, to measure gene transcription and differential expression.
A Python library bringing together utilities I've written over the years for work in bioinformatics and biostatistics, which should be generally applicable outside these fields as well. Focuses on string processing, DBI, and math.
Enrichment analysis for customized organisms
Event studies in several statistical packages
Excel + Cytoscape + R = ExCytR = magical unicorn networks
FunctSNP is an R interface to an SQL database for linking single nucleotide polymorphisms (SNPs) to functional knowledge. FunctSNP should work on any OS on which R runs.
GADA - Genome Alteration Detection Algorithm
GNUexp is a GNUstep/Cocoa framework and a collection of tools helping you to plan, develop, and administer applications associated with visual psychophysics, experimental psychology and statistical data analysis.
GenCart: Genome Cartology in the R Statistical Programming Language
A set of tools in R to facilitate the use of parametric and semi-parametric splines in multilevel models.
A hackathon for the analysis of disease outbreaks in R
just a bunch of PhD projects
GUI for the ISOP R module. The ISOP R module is an implementation of the equal named IRT model by Scheiblechner
Ida is a data analysis application framework that features user interface integration, database support, and bridges to popular statistical analysis packages. Application development is currently focused on the bio-informatic analysis of microarrays.
NGS genotype imputation using LD structure
This project supports the development of the Land Use Scenario DevelopeR (LUSDR) software package. LUSDR is an integrated land use and transportation modeling application which uses stochastic methods to simulate multiple possible futures.