AUTO is a publicly available software for continuation and bifurcation problems in ordinary differential equations originally written in 1980 and widely used in the dynamical systems community.
AUVNetSim is a simulation library for testing acoustic networking algorithms, written in Python, making extensive use of the SimPy discrete event simulation package.
AVPython embeds the Python programming language within ArcView GIS 3.x. This project will also encompass efforts to build a similar bridge between Python and ArcObjects. An integrated, redistributable Python / PyWin32 setup wizard is also published here.
python scripts to analyze antibody libraries
02-14-2014. Hamming distance calculation has been updated. These are python scripts to analyze antibody libraries sequenced by next generation sequencing methods (454, Ion Torrent, MiSeq) as described in D'Angelo et al MAbs. 2014 Jan 1;6(1):160-72.
Create a series of programs to help ABAQUS users from creating models to retrieve results. Partially dump the slow and resource-consuming CAE interface.
A tool for automating laser ablations for neuroscience
Ablator is a suite of software that automates the microscopic detection of cell targets and also directs a 2-photon microscope to lesion these targets in arbitrary patterns for neuroscience research. See Hayes et al 2012 for an example of its usage (http://www.pnas.org/content/109/21/8286.abstract).
Representation method of abstract information based on hierarchical network of simplest nodes. Each node can represent both value and attribute. Network is able to accumulate, classify and learn information.
The Acids and Bases chapters' (14 and 15) calculations are arguably the hardest calculations in all of AP Chemistry. With some problems taking as long as ten minutes to solve, the can be hard to wrap the mind around. However, with the Acids and Bases Program, a quick answer is never more than a click away.
Acoustic Simulation Library for Frequency and Time Domain Simulations.
ART is a flexible simulation framework for wind instruments. It includes a growing library of modelling elements. So far bore discontinuities, branches, tone holes, cylindrical and conical tubes, Bessel horns and bent tubes are available for frequency domain modelling. In the time domain generic bidirectional propagation elements, scattering elements, fractional delays, convolution with reflection functions and general z-domain networks are available and can be described using MuParserX expressions. Cylindrical and conical ducts can also be defined based on their geometry. Available models and their parameters can be enumerated and combined to form simulators for complex acoustical structures. Parameters can be specified symbolically by expressions containing other parameter values or global variables. Dependencies between parameters are resolved at run time. However, MuParserX expressions are compiled at design time. Zero-delay loops are detected and reported.
A set of tools for defining, implementing and steering a dataflow/workflow process on top of a set of CORBA OO components.
ActiveFolder can be integrated with existed scientific computation.
Welcome to the ActiveFolder project, the open source for management simulataion data and reproducing. ActiveFolder provide data reproduction for comparative study and searching reproduction data, by storing data coupled with provenance information. ActiveFolder is integrated existed grid computing service and cloud services. And also, ActiveFolder can be integrated with existed scientific computation, analysis and visualization software without modification.
Starting from various input files, we parse to find a list of addresses, then display them on a map.
Discover who lives close to each meeting, from your list of meeting locations and potential invitees.
Automated Database-lookup and Sequence Analysis Tool for use specifically with BioPython. Used for obtaining Sequence and other Data from online databases and processing the data using open bioinformatics tools like BLAST and MEME.
A python module that provides algorithms for advanced search - basically all you need to build a search engine.
Using this plugin-based framework, you can instantly start working on the *brain* of your bot (irc bot, chatterbot, robot, ...). With support for db, irc, logging and programming-language independent plugins, users can easily enhance the functionality.
Advanced numerical instruments: adaptive meshing, FE methods, solvers
Ani2D provides portable libraries for each step in the numerical solution of systems of PDEs with variable tensorial coefficients: (1) unstructured adaptive mesh generation, (2) metric-based mesh adaptation, (3) finite element discretization and interpolation, (4) algebraic solvers.
Advanced Statistical Modeling Package, ASMP for short, is a scientific tool for research. The goal is providing a unified interface for SEM, HLM, DYS, etc., and providing a free package, free for using and free using changing, for all researchers.
Advanced and Discrete Mathematics Library for Python
Python, NLTK-based package for shallow parsing of Brazilian Portuguese
Aelius is an ongoing open source project aiming at developing a suite of Python, NLTK-based modules and interfaces to external freely available tools for shallow parsing of Brazilian Portuguese. It also includes language resources such as language models, sample texts, and gold standards. Presently, Aelius already offers facilities for POS-tagging and chunking corpora and outputting annotations in different formats, such as in XML in the TEI P5 encoding scheme.
Affymetrix GeneChip Operating Software (GCOS) is used to control Affymetrix Microarray scanners and fluidic stations. Using the DCOM API, this project provides programmatic scripting of GCOS using Python.
Agaseous-NES is a graphic app for creating integrated circuit layers. Developers can import Agaseous for SuperWikia Alpha .AJA (Agaseous Joint Application) text files to automate & create asauna plates. Also imports and intergrate Adobe .PSD files.
AgentQ is a project aimed at the development of virtual agents that mimic human intelligence and attributes (such as language or commonsense), as well as environments for these agents to learn and function in.
Aimgraph is a user-friendly front-end for the Atoms-In-Molecules analysis programs developed by Bader group.
Aircraft navigation receiver using software-defined radio (SDR)