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Hot topics in Scientific/Engineering Softwarewireless sensor networks simulation code in matlab arabic pos artificial intelligence bot digital archive pos tagger for arabic /12/2004 - buckwalter arabic morphological analyzer lattice boltzmann matlab buckwalter arabic morphological buckwalter arabic morphological analyzer
Lattice simulation of biochemical reactions and diffusion1 weekly downloads
An RPN calculator for vectors of arbitrary dimension. Supports multiple undo/redo, programmable macros and variables. Saves/loads stack to/from disk. Lots of built-in scalar, vector, stack functionality.1 weekly downloads
Perl scripts used to process mock 16S data for threshholds.
This is an extension to the standard 2D HF package (A Numerical Hartree-Fock Program for Diatomic Molecules by Jacek Kobus, Leif Laaksonen and Dage Sundholm) that adds some extra functionality.
@Note2 is now available in www.anote-project.org @Note is a Biomedical Text Mining workbench that integrates current Biomedical Text Mining (BioTM) methods and provides biologists with intuitive tools capable of supporting their bibliographic searches and further literature curation.
ASSD is a simple biological sample database focused on the storage of proteomics data. It tracks every processing step incl. results throughout a sample's lifetime. Next to proteomics data it can also store other results like FACS or Western Blots.
AAARF, written in PERL and with numerous adjustable parameters, identifies sequence overlaps in small shotgun sequence datasets and walks them out to create long pseudomolecules representing the most abundant repeats in a genome.
Algorithmic Based Automatic Contiguation of Shot-gun sequences (ABACAS) is an integrated platform for quickly contiguating reference based assemblies.
Convert a Garmin ADM database file to a GPX file
A.I. security app. Development ceased.
APoDIx is a Portable Bio-Database Index system. It retrieves biological database information from the website of Oxford Journals, save them in a local position, and provides a viewer for display and search the information.
Metabolic reconstruction from DNA or protein sequences.
ASKGene (Automated Sequence Knowledge GENErator) - a customizeable integration platform for sequence-processing bioinformatics tools.
Assimilator is a molecular genetics tool to inform selection of associated genetic variants for functional studies
ASpipe is a pipeline to process GeneSeqer/GMAP alignments and identify alternative splicing (AS) events from the alignments. It requires unix bash, perl 5.0+ with DBI module and MySQL5.0+ to run properly.
An AI irc bot that will interact with irc users.
Albion is a digital document archive presentation package. Features include a searchable database, an integrated spell checker, and automatic thumbnail generation. As native Perl as possible, the database/photos/search-function can be delivered on CD!
Symbolic Algebra using Perl
Algorithm::Evolutionary provides classes for performing simple evolutionary computation tasks, including definition of objects from XML and SOAP support. It should be interoperable with other EC libraries using SOAP.
Algorithm::MatchingModel is a perl library for running match simulations and statistics for two-sided matching problems. It includes classes for a preference factory, algorithm plug-ins, and gathering statistics between rounds.
A rule-based modelling framework for allosteric proteins and biochemical networks.
Aquaria collects the source code needed to run the generation of the hssp / pssh databases and the visualisation of the content.
Based on the Buckwalter Morphological Analyzer (Version 1.0) for doing Arabic stemming and POS tagging. Includes a rewrite of the original Perl script, with better documentation and more flexible options, and a C++ interface (usable as a library or app).
Tab2MAGE uses a flexible spreadsheet format for MIAME annotation of microarray experiments. Tab2MAGE spreadsheets may be submitted directly to ArrayExpress, or used to generate MAGE-ML for data exchange.
ArrayPipeLine is a web-based Laboratory Information Management system, using MySQL, Perl CGI and R. It enables high-throughput analysis of microarray data, providing automation of data handling, and rapid creation and implementation of analysis pipelines