Scientific/Engineering Software


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Scientific/Engineering Software

  • WhatsUp® Gold - Ranked #1 For Network Monitoring WhatsUp® Gold - Ranked #1 For Network Monitoring Icon
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  • Libraries for electrophysiological data

    This project houses software to analyze data acquired from electrophysiology experiments. Currently, we have an Octave/MATLAB program to analyze electroneurogram traces of coupled oscillators, and a Perl library for the analysis of voltage trace data

    Downloads: 0 This Week Last Update: See Project
  • A Simple Sample Database

    ASSD is a simple biological sample database focused on the storage of proteomics data. It tracks every processing step incl. results throughout a sample's lifetime. Next to proteomics data it can also store other results like FACS or Western Blots.

    Downloads: 0 This Week Last Update: See Project
  • infix2pharmml

    Converter between mathematical infix notation and PharmML math markup.

    PharmML is a markup for pharmacometrics markup language documented at This project provides a converter between the conventional mathematical infix notation and the math markup used by PharmML. Try it online at the link below.

    Downloads: 0 This Week Last Update: See Project
  • Media Cloud

    Media Cloud allows automated downloading and analysis of on-line media. It is intended to automate what was previously a tedious process of painstaking manual content analysis.

  • iMir

    Integrated pipeline for HT miRNA-Seq data analysis

    Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular pipeline, called iMir, integrating multiple open source modules and resource in an automated workflow, devising different statistical approaches to analyze data rigorously. iMir comprises also a Graphical User Interface (GUI), so that the pipeline is particularly suited for biologist and early stage bioinformaticians and produces both graphics and text outputs.

    Downloads: 0 This Week Last Update: See Project
  • easylatex

    Why is it quicker to express simple equations in plaintext that it is to write the equivalent LaTeX? Easylatex is a preprocessor to make writing LaTeX much quicker. Project activity mode ( ): sporadic

    Downloads: 1 This Week Last Update: See Project
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