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BRMABench is a system of benchmark per comparison. This benchmark makes diverse routines of test in one determined time, the final time expense is always the same and what it determines score it is the amount of interactions in this same time.
Beam and it's follow-on I-Beam are sets of programs to produce coverage charts of radio sources. It has been used for RADAR, DME, VOR and various communications sources specific to aviation. However, it is also valid for cell phone, TV and radio towers
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Literature management tools typically require that bibliography is typed in by hand for each PDF reprint added. The BibGlimpse retriever presented here can automatically find Medline entries for arbitrary PDFs ( http://bioinf.boku.ac.at/bibglimpse ).
BigRedBin is a web-based tool designed to pre-process metabolomics data generated by a mass spectrometer in an attempt to increase the signal-to-noise ratio. This is accomplished by using information from multiple technical replicates.
Bike Power, calculates the power output and power consumption for bicycling.Given things like riding speed, body weight, hill grade, and wind speed it give you a table with power output and power consumption.
ProServer is a very lightweight DAS server written in Perl. It is simple to install and configure and has existing adaptors for a wide variety of data sources. It is also easily extensible allowing adaptors to be written for other data sources.
Bio-WormBase provides a suite of software for the installation and monitoring of a WormBase mirror site.
A Perl Extension for modeling enzymatic (biochemical) reaction networks
This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text. The method is based on SVM but other ML algorithms can be adopted. The method details are explained in the following paper: Ehsan Emadzadeh, Azadeh Nikfarjam, and Graciela Gonzalez. 2011. Double Layered Learning for Biological Event Extraction from Text. In Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task, Portland, Oregon, June. Association for Computational Linguistic
BioMail is a small web-based application for medical researchers, biologists, and anyone who wants to know the latest information about a disease or a biological phenomenon.
BioNotate is an open-source web-based tool for the collaborative and distributed annotation of biomedical text with entities and facts of interest.
Simple small tools for bioinformatics written in bash perl and python
An Ajax based Functional Genomics Application Server to aid in functional analysis of entire genome in-silico.
Biolet is project aimed to analyze genomic DNA sequences using wavelets. Of additional interest may be a batch processing tool for doing round-robin scheduling of jobs on a beowulf cluster. For that checkout the project robin from the CVS.
A collection of corpus and access routines for developing biological literature analysis systems.
This is a collection of softwares that I have been using in my research on protein interaction network. By release them under the GPL 2.0 lience, I hope that they can be useful to others, as well.
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The goal of the blinkserv-project is the design of the \'Simple Blinkenlights Transfer Protocol\' and the implementation of a server that can handle all of its features.
Boardstatus is a Web-CGI/Postgresql database to manage electronic prototypes, including butch lists, notes, and and parameters. Support for users with different authorizations is included.
C-squares is an easily implemented method for storage, querying and display of spatial data locations, based on a hierarchical, grid-based representation of the Earth' surface. Source code for encoding, decoding, mapping, etc. is provided via this site.
CAPE stands for Clips And Perl with Extensions. As its name suggests, CAPE is a combined programming environment which allows programs to be written in Clips, a forward-chaining rule-based system which was originally developed by NASA, and Perl.
A bioinformatics project to create tutorials, including programming code examples, to help in bioinformatics training. Will primarily create examples with Perl, PostgreSQL, R, Bioperl, Emboss. Part of Comparative and Collaborative Bioinformatics Project.
CCC Cron Cluster is a job scheduling program which runs cron like and ad-hoc jobs on tcp/ip clusters. The Controller and the Client run on any POSIX compliant sytsem with gcc and Inet socket libraries. It is controlled from a web interface in Perl/PHP.
Language, compiler and simulator for CDL cycle description language Platforms: OSX, Linux, Cygwin CDL is a C-like language for hardware description; simulator generates C++ models and synthesizable verilog. Includes C++ cycle simulation engine.