Find restriction enzymes that help differ known homologe DNA sequences (RFLP). Simulate electrophoresis gels. Usefull to investigate the diversity of a population by one of their common genes. Written in perl, uses bioperl modules and the GD library.
A collection of implementations of the Lovins stemmer as described in "Development of a Stemming Algorithm" by Julie Beth Lovins (published in "Mechanical translation and computational linguistics", 11:22-31, 1968).
SunlightLB is an open-source 3d lattice Boltzmann code which can be used to solve a variety of hydrodynamics problems, including passive scalar transport problems.
TraffStats: network Traffic Statistic - is a monitoring and traffic analysis software, using SNMP to collect data from any enabled device. - has the ability to generate graphs (using jpgraph) with the option to compare and sum up different devices.
This is an Automated Essay Grader such as the ones used in exams like GRE, GMAT and TOEFL. It grades essays based on relevance to the essay prompt, sentence structure and no. of correct factual statements, and assigns them a score in the range of 1-6.
WikiPrep is a Perl script for preprocessing Wikipedia XML dumps.
BSmapper - Sequence mapper for bisulfite sequencing reads for DNA methylation studies. Can handle Sanger and 454 reads for mapping to whole genomes or target regions.
Moodss is a modular monitoring application, composed of a GUI and a daemon, which supports any device or process for which a module can be developed. Complete dashboards with graphical viewers, thresholds, SQL database archiving, ... can be managed.
openAVA is a project to realize GNU/GPL based software for advertised bidding, placing and accounting in the building trade. Approximately it will be available in german only. +++ openAVA is outdated +++ It was written for the gtk2-perl Inline mod
An open-source quantum chemistry program package
PSI is an open-source program for computing molecular properties using high-accuracy, ab initio, quantum mechanical models.
wfb2sql is a Perl script that extracts information from the CIA World Factbook and creates SQL statements for IBM DB/2, PostgreSQL or MySQL. This data builds a perfect database for learning and teaching SQL.
Connotea is an online reference management system. It allows users to store and organise their links and scholarly references online, and can automatically import bibliographic data from online archives. This project hosts the source code for Connotea.
The GenDB system for the annotation of prokaryote genomes. The Perl/MySQL/Apache based system supports cmd-line mode annotation, integrating dozens of bioinformatics tools, but also provides a user-friendly web interface for community annotation efforts
This is the high throughput PCR primer design software that is used at the J. Craig Venter Institute. See: Li K, et al. "Novel computational methods for increasing PCR primer design effectiveness in directed sequencing". BMC Bioinformatics 2008, 9:191.
A graphical microcode simulator with a reconfigurable datapath.
Tapeworm is a Gnome-desktop health profiler. Keep track of your diet, including calories and %'s of fat, carbs, and protein, exercise, blood glucose, weight, and anything else! Easily produce user configurable plots and printable reports.
A perl/Gtk2 GUI for VNUML (http://www.dit.upm.es/vnuml/). This GUI will let you quick prototype your VNUML topology by graphically placing, linking and editing network elements, reading/writing VNUML files and run your simulation right from the GUI.
VoxForge collects user-submitted speech audio files for the creation of Acoustic Models for Free and Open Source Speech Recognition Engines such as HTK, Julius, ISIP and Sphinx.
autopilot is a command and control system for helicopters (and can be extended for fixed wing aircraft). It provides a three-axis EFIS and moving map on the ground station. The unmanned aerial robot has instrumentation for attitude, engine and position.
free2bind a suite of general purpose bioinformatics tools for computing the minimum free energy (the most stable) binding between two separate RNA molecules.
The BEE Project is a suite of tools supporting Business Intelligence project implementation including ETL tool and OLAP server and a thin client. The ROLAP server ensures multipass SQL generation and powerful cache management (utilizes MySQL RDBMS).
BioNotate is an open-source web-based tool for the collaborative and distributed annotation of biomedical text with entities and facts of interest.
Scripts for parsing and general use in Computer Forensics - Octane Lab
O projeto Byte Investigator do Octane Labs nasceu com a finalidade de se ter um kit de ferramentas (scripts perl) de parsing de varias estruturas do ambiente Windows (arquivos e estruturas dos file systems). Estas ferramentas poderão ser utilizadas no cotidiano dos profissionais e pesquisadores de segurança nas tratativas de resposta a incidentes de Segurança de Informação e Computação Forense. A técnica de parser ou parsing consiste em usar um programa que detalhe as informações contidas em uma estrutura, seja ela de um arquivo do sistema operacional (por ex, um .lnk), de um arquivo de um aplicativo (por ex, um .ppt) ou mesmo de uma estrutura do próprio sistema (por ex, o $I30). Byte Investigator The Byte Investigator project from Octane Labs was born in order to be a parsing toolkit for several Windows structures (files and file system structures). These Perl script tools are useful tools for Computer Forensics professionals and Information Security researchers.
Software for the Conrad/Voltcraft Charge Manager 2020 (CM2020) battery charger
CosmicOS is a framework for creating stand-alone messages suitable for sending to ourselves in the distant future, or to use in SETI research. It is inspired by Hans Freudenthal's language, Lincos, and Carl Sagan's book, Contact.