Scientific/Engineering Software

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Scientific/Engineering Software

  • Get the Edge; Toad Edge Get the Edge; Toad Edge Icon
    Get the Edge; Toad Edge Icon

    Your next-gen toolset for MySQL database environments

    If your organization takes advantage of the cost-effective, flexible MySQL open source database platform, then you need a toolset that supports your commitment to open source relational databases.  Toad Edge for MySQL has what you need and helps you ramp up on MySQL quickly, ensuring faster time to value.
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    Focus on your Business with an integrated Business Cloud Icon

    Reliable & Secure Communications Systems

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  • AMOS

    AMOS is a collection of tools for genome assembly

    AMOS is a collection of tools and class interfaces for the assembly of DNA reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation.

  • Albion digital content index/management

    Albion is a digital document archive presentation package. Features include a searchable database, an integrated spell checker, and automatic thumbnail generation. As native Perl as possible, the database/photos/search-function can be delivered on CD!

    Downloads: 0 This Week Last Update: See Project
  • Algeops

    Symbolic Algebra using Perl

    Downloads: 0 This Week Last Update: See Project
  • Algorithm::MatchingModel

    Algorithm::MatchingModel is a perl library for running match simulations and statistics for two-sided matching problems. It includes classes for a preference factory, algorithm plug-ins, and gathering statistics between rounds.

    Downloads: 0 This Week Last Update: See Project
  • Another Portal for Examining DNA

    The system is designed for the automated analysis of high throughput sequencing data. At present Aped is focused on the analysis of data derived from Sanger and 454 sequencing. Additional functionality exists for SAGE and taxonomic profiling.

  • Identify and respond to threats before damage is done Identify and respond to threats before damage is done Icon
    Identify and respond to threats before damage is done Icon

    A SIEM that makes it easy to use logs for security, compliance, and troubleshooting.

    SolarWinds® Log & Event Manager (LEM) delivers comprehensive Security Information and Event Management (SIEM) capabilities in a highly affordable, easy-to-use, and quick-to-deploy virtual appliance. LEM provides the visibility, security, and control that IT professionals need to alert on and respond to security threats, and assist in meeting the regulatory compliance guidelines of HIPAA, PCI DSS, SOX, and more. Try it free for 30 days!
  • BIOperl Scripts for PHylogenetic Analyse

    Biospha is a suite of perl scripts based on bioperl toolkit intended to help researches to manage large sequence file. With BIOSPHA you can classify each sequence according to the NCBI taxonomy. You also can get all taxonomic info from a GI or Taxid.

    Downloads: 0 This Week Last Update: See Project
  • BigRedBin

    BigRedBin is a web-based tool designed to pre-process metabolomics data generated by a mass spectrometer in an attempt to increase the signal-to-noise ratio. This is accomplished by using information from multiple technical replicates.

    Downloads: 0 This Week Last Update: See Project
  • Bio::Parse::SwissProt - perl module

    A Perl module that provides methods for retrieving each and every field from a standard SwissProt file.

    Downloads: 0 This Week Last Update: See Project
  • BioGraphNet

    BioGraphNet is a 'sandbox' within BioMOBY, comprising a common standard and collection of services for sharing distributed protein-interaction network information. We now serve several network data types, and encourage others to participate.

    Downloads: 1 This Week Last Update: See Project
  • Bobware EDA tools

    Bobware tool suite is a set of small EDA tools which are useful in the design of integrated circuits. The suite contains a perl/tk script for region planning large ASICs (application specific integrated circuits.)

    Downloads: 0 This Week Last Update: See Project
  • Mac CRM & Project Management app for small business Mac CRM & Project Management app for small business Icon
    Mac CRM & Project Management app for small business Icon

    Manage your leads, clients and projects – all in one place. Daylite keeps everyone on the same page.

    Stop using frustrating spreadsheets and expensive, clunky CRMs that waste more time than they save. Try Daylite, a better way to keep track of relationships and projects so your team can win more business & get more done.
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  • CODD

    CODD is a tool for creating and analyzing statistical measures of "developer involvement" in free software projects.

    Downloads: 0 This Week Last Update: See Project
  • Cell Cycle Ontology

    The Cell Cycle Ontology extends existing ontologies for cell cycle knowledge building a resource that integrates and manages knowledge about the cell cycle components and regulatory aspects in OBO, OWL, and other commonly used ontology representation

    Downloads: 0 This Week Last Update: See Project
  • Chart Gnuplot

    A Perl object-oriented library for plotting graphs with Gnuplot.

    Downloads: 0 This Week Last Update: See Project
  • Coati

    Coati is a web development framework and API for genome databases that supports multiple database vendors and database schemas.

    Downloads: 0 This Week Last Update: See Project
  • CompBio Perl module suite

    A collection of Perl modules and programs for bioinformatics. Design intention is to make most common, straight-forward tasks in computational biology as simple, and portable, as possible.

    Downloads: 0 This Week Last Update: See Project
  • Comprehensive Microbial Resource (CMR)

    The Comprehensive Microbial Resource (CMR) is a free website used to display information on all of the publicly available, complete prokaryotic genomes.

    Downloads: 0 This Week Last Update: See Project
  • DAGchainer

    DAGchainer identifies chains of gene pairs sharing conserved order between genomic regions, by identifying paths through a directed acyclic graph (DAG).

  • Devantech I2C to USB Commander

    A Perl script that interfaces with the Devantech USB to I2C interface adapter. This script allows a user to read and write as a master to the i2c bus as well as set or get the value of the io pins.

    Downloads: 0 This Week Last Update: See Project
  • Diagnostic Test Calculator

    Testcalc is a CGI-based calculator for diagnostic test characteristics written in Perl that displays results both numerically and graphically.

    Downloads: 0 This Week Last Update: See Project
  • EMBOSS explorer

    EMBOSS explorer is a web-based graphical user interface to the EMBOSS suite of bioinformatics tools. It is written in Perl and is exceedingly simple to install, configure, maintain and use.

  • EVidenceModeler (EVM)

    EVidenceModeler (aka EVM) combines ab initio gene predictions and spliced protein and transcript alignments into weighted consensus gene structure predictions.

    Downloads: 1 This Week Last Update: See Project
  • Encode Arabic Icon

    Encode Arabic

    Encode Arabic provides tools for encoding and decoding Arabic in Haskell, Python, Perl, or LaTeX. Interprets the ArabTeX notation to generate original orthography or phonetic transcription. Supports Buckwalter and other romanizations. Converts legacy byte encodings into Unicode. http://github.com/otakar-smrz/encode-arabic

  • GISI.pm

    an object-oriented API to access spatial data from Perl scripts, defines a set of classes and conventions to access spatial data independent of underlying file format or access method, based on OpenGIS Abstract Specification (see http://www.opengis.org)

    Downloads: 0 This Week Last Update: See Project
  • GLEAN

    GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.

  • Gene Ontology

    The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more.

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