Cluster Search, a program for genome-wide regular expression pattern matching.
Consensus Variant Effect Classification
The package provides SVM models to be used with SVMlight (http://svmlight.joachims.org/) for drawing a consensus out of individual 3rd-party predictions about the effect of mutations. The 3rd party tools are SIFT, Polyphen2, SNPs&GO and Mutation Assessor. The package also provides a series of Perl modules and scripts to assist in the preparation of data. The modules can be used to build custom tools and pipelines, whereas the scripts provide basic executable implementations based on the modules. SVMlight, SIFT, Polyphen2, SNPs&GO and Mutation Assessor are the property of their respective authors and institutions and are not distributed in this package.
Coati is a web development framework and API for genome databases that supports multiple database vendors and database schemas.
Codewars is an client-server game. You have to write a robot-program in any programminglanguage, which fights against other robots in an simulated arena. A musst see for fans of artificial intelligence and coding.
When planning heterologous expression of a gene, it is necessary to assess the number of rare codons that can be encountered in the gene. This program helps you find out.
The Collaborative Testing System (CTS) tests parallel software using various implementations of MPI. It works on multiple platforms and supports batch systems including LSF, LCRM and workstations without a batch system. It includes a numerical diff tool.
This package aims to enable complex ideogram drawing in genetic applications for different species.
The CommGen platform is intended to be a simple, scalable integration platform for small to medium problem sets. The architecture is simple, consisting of a distributed kernel, distributed O/S, agent and application layer.
Group of small samples meant to simply illustrate and explore different concepts in computer science.
A collection of Perl modules and programs for bioinformatics. Design intention is to make most common, straight-forward tasks in computational biology as simple, and portable, as possible.
This command-line tool will help people who want to compare 2 csv-like files, and get a detailed report on which rows and fields differ between both files. An awk-based version and Perl Version is currently available.
The Comprehensive Microbial Resource (CMR) is a free website used to display information on all of the publicly available, complete prokaryotic genomes.
A portal project to produce a web based front end to a compute resource, such as a cluster, using PHP, mysql, apache and perl. The intent is to allow non-programmers to use complex programs through an intuitive web interface.
An attempt at developing an Artificial Inteligence software, based on the notion that inteligence is a set of conditional choices (in programming terms, it means a whole lot of if statements).
Preference (or approval) ballot tabulation to select winner(s) of election contests or rank decisions. Uses dropping cost minimization to combine two Condorcet methods: Cloneproof Schwartz Sequential Dropping and Tideman's Ranked Pairs.
Connotea is an online reference management system. It allows users to store and organise their links and scholarly references online, and can automatically import bibliographic data from online archives. This project hosts the source code for Connotea.
Software for the Conrad/Voltcraft Charge Manager 2020 (CM2020) battery charger
Contact Conductance Estimator (CoCoE) is a program that estimates the conductance (or resistance) between 2 surfaces in contact. It is meant to be used by designers and analysts of physical systems where heat transfer by means of contact is of importance.
CoopTrade is project for a virtual marketplace on the Web where users create autonomous agents to buy and sell goods on their behalf. Briefly, Agent-Based Marketplace for Personnel Acquisition.
CORe microBiome Analysis Tools
Corbata is a set of statistical tools that can be used to analyze the core microbiome across a set of samples.
CosmicOS is a framework for creating stand-alone messages suitable for sending to ourselves in the distant future, or to use in SETI research. It is inspired by Hans Freudenthal's language, Lincos, and Carl Sagan's book, Contact.
The CounterMoon suite describes a collection of tools and ideas created when working on the http://CounterMoon.org project. I've been lucky enough to get help with this project: I want to return the favor as much as possible.
A script to generate KML and HTML pages from a folder full of GPS enabled photographs.
Cscape is an application for visualizing and navigating through data from a Reverse Phase Protein Microarray (RPMA). Cscape uses the Google Maps API to map the RPMA data on top of an image of a cancer cell and its associated pathways.
CuiTools (Coo-e Tools) is a freely available package of Perl programs for unsupervised and supervised word sense disambiguation experiments. The name CuiTools comes from the Concept Unique Identifiers (CUIs) found in the Unified Medical Language System.