Scientific/Engineering Software

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Scientific/Engineering Software

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  • Cluster Search

    Cluster Search, a program for genome-wide regular expression pattern matching.

    Downloads: 0 This Week Last Update: See Project
  • CoVEC

    Consensus Variant Effect Classification

    The package provides SVM models to be used with SVMlight (http://svmlight.joachims.org/) for drawing a consensus out of individual 3rd-party predictions about the effect of mutations. The 3rd party tools are SIFT, Polyphen2, SNPs&GO and Mutation Assessor. The package also provides a series of Perl modules and scripts to assist in the preparation of data. The modules can be used to build custom tools and pipelines, whereas the scripts provide basic executable implementations based on the modules. SVMlight, SIFT, Polyphen2, SNPs&GO and Mutation Assessor are the property of their respective authors and institutions and are not distributed in this package.

    Downloads: 2 This Week Last Update: See Project
  • Coati

    Coati is a web development framework and API for genome databases that supports multiple database vendors and database schemas.

    Downloads: 0 This Week Last Update: See Project
  • Codewars

    Codewars is an client-server game. You have to write a robot-program in any programminglanguage, which fights against other robots in an simulated arena. A musst see for fans of artificial intelligence and coding.

    Downloads: 3 This Week Last Update: See Project
  • Codons

    When planning heterologous expression of a gene, it is necessary to assess the number of rare codons that can be encountered in the gene. This program helps you find out.

  • Collaborative Testing System (CTS)

    The Collaborative Testing System (CTS) tests parallel software using various implementations of MPI. It works on multiple platforms and supports batch systems including LSF, LCRM and workstations without a batch system. It includes a numerical diff tool.

    Downloads: 0 This Week Last Update: See Project
  • ColoredChromosomes

    This package aims to enable complex ideogram drawing in genetic applications for different species.

    Downloads: 0 This Week Last Update: See Project
  • CommGen: Component Integration Platform

    The CommGen platform is intended to be a simple, scalable integration platform for small to medium problem sets. The architecture is simple, consisting of a distributed kernel, distributed O/S, agent and application layer.

    Downloads: 0 This Week Last Update: See Project
  • Comp Sci Guru Sample Code

    Group of small samples meant to simply illustrate and explore different concepts in computer science.

    Downloads: 0 This Week Last Update: See Project
  • CompBio Perl module suite

    A collection of Perl modules and programs for bioinformatics. Design intention is to make most common, straight-forward tasks in computational biology as simple, and portable, as possible.

    Downloads: 0 This Week Last Update: See Project
  • CompareFiles

    This command-line tool will help people who want to compare 2 csv-like files, and get a detailed report on which rows and fields differ between both files. An awk-based version and Perl Version is currently available.

    Downloads: 2 This Week Last Update: See Project
  • Comprehensive Microbial Resource (CMR)

    The Comprehensive Microbial Resource (CMR) is a free website used to display information on all of the publicly available, complete prokaryotic genomes.

    Downloads: 0 This Week Last Update: See Project
  • ComputePortalProject

    A portal project to produce a web based front end to a compute resource, such as a cluster, using PHP, mysql, apache and perl. The intent is to allow non-programmers to use complex programs through an intuitive web interface.

    Downloads: 0 This Week Last Update: See Project
  • Conditional AI

    An attempt at developing an Artificial Inteligence software, based on the notion that inteligence is a set of conditional choices (in programming terms, it means a whole lot of if statements).

    Downloads: 0 This Week Last Update: See Project
  • Condorcet with Dual Dropping

    Preference (or approval) ballot tabulation to select winner(s) of election contests or rank decisions. Uses dropping cost minimization to combine two Condorcet methods: Cloneproof Schwartz Sequential Dropping and Tideman's Ranked Pairs.

    Downloads: 0 This Week Last Update: See Project
  • Connotea

    Connotea is an online reference management system. It allows users to store and organise their links and scholarly references online, and can automatically import bibliographic data from online archives. This project hosts the source code for Connotea.

  • Conrad Charge Manager 2020 - CM2020

    Software for the Conrad/Voltcraft Charge Manager 2020 (CM2020) battery charger

    Downloads: 2 This Week Last Update: See Project
  • Contact Conductance Estimator (CoCoE)

    Contact Conductance Estimator (CoCoE) is a program that estimates the conductance (or resistance) between 2 surfaces in contact. It is meant to be used by designers and analysts of physical systems where heat transfer by means of contact is of importance.

    Downloads: 12 This Week Last Update: See Project
  • Cooperative Trade

    CoopTrade is project for a virtual marketplace on the Web where users create autonomous agents to buy and sell goods on their behalf. Briefly, Agent-Based Marketplace for Personnel Acquisition.

    Downloads: 0 This Week Last Update: See Project
  • Corbata

    CORe microBiome Analysis Tools

    Corbata is a set of statistical tools that can be used to analyze the core microbiome across a set of samples.

    Downloads: 0 This Week Last Update: See Project
  • CosmicOS

    CosmicOS is a framework for creating stand-alone messages suitable for sending to ourselves in the distant future, or to use in SETI research. It is inspired by Hans Freudenthal's language, Lincos, and Carl Sagan's book, Contact.

    Downloads: 8 This Week Last Update: See Project
  • CounterMoon Suite

    The CounterMoon suite describes a collection of tools and ideas created when working on the http://CounterMoon.org project. I've been lucky enough to get help with this project: I want to return the favor as much as possible.

  • CreateMap

    A script to generate KML and HTML pages from a folder full of GPS enabled photographs.

    Downloads: 0 This Week Last Update: See Project
  • Cscape (Cancer Landscape)

    Cscape is an application for visualizing and navigating through data from a Reverse Phase Protein Microarray (RPMA). Cscape uses the Google Maps API to map the RPMA data on top of an image of a cancer cell and its associated pathways.

    Downloads: 0 This Week Last Update: See Project
  • CuiTools

    CuiTools (Coo-e Tools) is a freely available package of Perl programs for unsupervised and supervised word sense disambiguation experiments. The name CuiTools comes from the Concept Unique Identifiers (CUIs) found in the Unified Medical Language System.

    Downloads: 1 This Week Last Update: See Project

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