CFD code using Arbitrary Lagrangian Eulerian algorithm.
Physical software, solves (3+1)D nonlinear parabolic equations. It simulates light propagation throw a continuous medium with saturable gain and absorption.
1-dimensional Eulerian Vlasov-Maxwell solver, used primarily for studies of kinetic effects in plasma waves and for stimulated Raman scattering.
Lapack/quadprog QP for VBA/.Net/Java
F2what is an open source project to translate algorithmic fortran to a variety of languages (java, dotnet and VBA so far). It offers a Fortran77 parser with code transformations, variable disambiguation, and modular output to other programming languages. It also offers already translated versions of Lapack and quadprog to Java, .Net and VBA, to give access to SVD, LU, QR, Cholesky, eigenvalue decomposition, linear system solving and QP optimization in those three languages.
HYP CFD is a structured, 3-D Navier-Stokes, MPI parallel multi-block computational fluid dynamics program for fluid thermophysics research, and high speed aerospace vehicle and propulsion applications.
elsimp is a very simple but efficient and accurate finite element solver for 1-d,2-d,3-d elements. elsimp is written in eiffel language calling c and fortran routines for mathematical calculations.
Interpretation of Biomolecular MD simulations
MDcons is a tool to analyze conserved contacts during Molecular Dynamics (MD) simulations of Protein, Rna, Dna & Ligand based complexes. The input is either a Molecular Dynamics trajectory or a set of snapshots. The input can also be a single snapshot. The outputs are (1) map of most/less frequently conserved contacts during MD (2) a list of most/less frequently conserved contacts during MD.
MACROMS is a software to model the coastal ocean circulation and fish larvae transport for the USA Mid-Atlantic region, which covers estuaries and continental shelves of NYC, NJ, DE, MD, PA, VA and NC. Rutgers ROMS model is applied for this study.
The SAWES (Self-Adapting Wavelet Electronic Structure) code performs density functional theory calculations using wavelet basis sets evolved concurrently with the self-consistent field iterations to optimally represent each wavefunction.
RAMSES is a general purpose simulation code for self-gravitating fluid dynamics with adaptive mesh refinement.
This software will use the most modern Equations of State to estimate and correlate phase equilibria of mixtures of compounds.
CFDtools is a set of libraries to manage data format for CFD (mesh/grid and flow data). It provides additional tools for development of simulations softwares.
The project OSMLE (Open Scientific Mathematical Learning Environment) has great promise to benefit various scientific fields of study by producing results from known formula's at the speed and accuracy of a PC.
A High-Order Multi-Variate Approximation Scheme for Arbitrary Data Sets, C implementation of the method described in http://web.mit.edu/qiqi/www/paper/interpolation.pdf, with Python and Fortran interfaces.
A 2D Eulerian hydro code using Godunov method. Author Ed Dendy.
Gauss-Kronrod quadrature on several variables.
hyperGK is a collection of C++ classes for parallelized numerical integration on several variables. The integrations are performed using Gauss-Kronrod quadrature. hyperGK is inspired and, to some extent, based on Quadpack, but generalized to multiple integrals on either rectangular regions or more general regions. This package is still under development. Usage examples can be found in the demonstration subdirectory.
Open source development for FluidEarth (https://fluidearth.net/default.aspx) which supports the OpenMI Standard (http://openmi.sourceforge.net) Here are OpenMI Association approved applications.
Thickness Measurement Tool for SRIM
ThiMeT v1.0 Thickness Measurement Tool for SRIM ThiMeT is a code for thickness calculation using SRIM (www.srim.org) stopping power values. ThiMeT code also can be used for the determination of the required thickness for energy degraders which are needed for nuclear reactions. ThiMeT calculation is very easy and quick compared to the TRIM code calculation. Please cite ThiMeT code as C. YALÇIN, “Thickness measurement using alpha spectroscopy and SRIM”, J. Phys.: Conf. Ser. 590, 012050 (2015); http://www.thimet.org TTEC v2.4 TRIM Transmission Energy Calculation TTEC is a code for calculation of average transmission energy using "Transmit.txt" output file of TRIM Code (www.srim.org). ThiMeT also include TTEC code.
MOPAC7 is a semi-empirical quantum-mechanics code written by James J. P. Stewart and co-workers. The purpose of this project is to maintain MOPAC7 as a stand-alone program as well as a library that provides the functionality of MOPAC7 to other programs.
Simulation, analysis, and management of the movement of water
Please see the “Files” link above to download different versions. The One-Water Hydrologic Flow Model (MODFLOW-OWHM, MODFLOW-ONE) is an integrated hydrologic flow (IHM) model that is an enhanced fusion of multiple MODFLOW (MF) versions. While maintaining compatibility with existing MF versions, MF-OWHM includes: linkages for coupled heads, flows, and deformation; facilitation of self-updating models, additional observation and parameter options for higher-order calibrations; and redesigned code for faster simulations. MF-OWHM represents a complete IHM that fully links the movement and use of groundwater, surface water, and imported water for consumption by agriculture and natural vegetation on the landscape, and for potable and other uses. This provides the foundation needed to address integrated hydrologic problems such as evaluation of conjunctive-use alternatives, sustainability analysis, including potential adaptation and mitigation strategies, and best management practices.
function library efficiently solving the Nearest Neighbor Problem (also know as the post office problem).
Software tools used in the study of Reversible Associations in Structural and Molecular Biology
Author : André Rezende - firstname.lastname@example.org Since Oracle stopped to support the Pro*Fortran compiler all the users of this preprocessor don't have alternative to use Embeded SQL c
Diffraction related calculations in Fortran 2003
full snapshots of CRYSFML code and parts of SXTALSOFT code
ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.