Open Source C Scientific/Engineering Software for Linux - Page 9

The Avalon Cheminformatics Toolkit contains tools to render and canonicalize SMILES and manipulate MOL file and related formats as well as structure fingerprinting.

PMC is an open project that aims to build the quality permanent magnet synchronous machine (PMSM) controller for use in a variety of scopes like RC or electric transport.

A package for transient and steady state simulation of organic solar cells.

RefDB is a reference database and bibliography tool for SGML, XML, and LaTeX documents, sort of a Reference Manager or BibTeX for markup languages. It is portable and known to run on Linux, Free/NetBSD, OSX, Solaris, and Windows/Cygwin.

42 is a comprehensive general-purpose simulation of spacecraft attitude and orbit dynamics. Its primary purpose is to support design and validation of attitude control systems, from concept studies through integration and test. 42 accurately models multi-body spacecraft attitude dynamics (with rigid and/or flexible bodies), and both two-body and three-body orbital flight regimes, modelling environments from low Earth orbit to throughout the solar system. 42 simulates multiple spacecraft concurrently, facilitating studies of rendezvous, proximity operations, and precision formation flying. It also features visualization of spacecraft attitude.

TXM is a free and open-source cross-platform Unicode & XML based text/corpus analysis environment and graphical client, supporting Windows, Linux and Mac OS X. It can also be used online as a J2EE standard compliant web portal (GWT based) with access control built in. DOWNLOAD LATEST VERSION OF TXM : http://textometrie.ens-lyon.fr/spip.php?rubrique61&lang=en TXM offers a comprehensive range of analysis tools (concordances, collocate search, frequency lists, etc.) based on the powerfull CQP full text search engine (http://cwb.sourceforge.net) and a range of statistical functions (factorial analysis, classification, cooccurrency analysis, etc.) based on R packages (http://www.r-project.org). Read the scientific background at the Textométrie project web site http://textometrie.ens-lyon.fr/?lang=en. Read a full description at the TEI Tools wiki http://wiki.tei-c.org/index.php/TXM.

rw calculates rank-width and rank-decompositions. It is based on ideas from "Computing rank-width exactly" by Sang-il Oum, "Sopra una formula numerica" by Ernesto Pascal, "Generation of a Vector from the Lexicographical Index" by B.P. Buckles and M. Lybanon and "Fast additions on masked integers" by Michael D. Adams and David S. Wise. On 2009's computers it works quite well up to graph sizes of about 28 nodes. Runtime and memory usage are exponential in the graph size.

CUDALucas is a program implementing the Lucas-Lehmer primality test for Mersenne numbers using the Fast Fourier Transform implemented by nVidia's cuFFT library. You need a CUDA-capable nVidia card with compute compatibility >= 1.3 up to CUDA 6.5, 2.x up to 7.0 and 3.x for >=CUDA 8.0 . The program is run from the command line, however it can be configured without using a terminal. See the Wiki for more details. README for new users available at the Files/Downloads page.

GKmap is a free K-Map disclosure software, which is developed to solve the Digital Electronics design problems. Along with design it also helps in analysis of information flow in the digital circuits.

Python module to interface the CLIPS expert system shell library.

Computational software for geotechnical engineering and mathematics: https://sourceforge.net/projects/matgts/files/ mtfem - finite element analysis, 2D, plane strain state (C, SDL); mtpile - analysis of a laterally loaded pile (C, SDL); mtslope - slope stability and displacement analysis using limit equilibrium (C,SDL); jswall - analysis of a diaphragm wall (JavaScript); jsmath - mathematics: polynomial equations, linear systems of equations, eigenvalues, matrix multiplication, matrix inversion (JavaScript); mtwall - obsolete program for analysing a diaphragm wall (C, SDL). Some Javascript programs require at least Firefox 3 or 4, because of <canvas> and "use strict";. Some general recommendations for compiling the C programs are here: https://sourceforge.net/projects/bars3d/ (SDL 1.2 is required)

Xdvi is a program for displaying DVI files on the X window system. Xdvik is a variant with hyperlink support and other additions, deployed e.g. in the TeX Live distribution.

The DEPRECATED legacy of the Gene Ontology project on SourceForge. Please see http://geneontology.org for current software and downloads.

Free cross-platform viewer for seismic data in SEG-Y format (Revision 1 draft 6 and its modifications).

A set of very optimized tools for indexing/querying huge genomes/files. Provided so far: a very fast exact mapper, and an unconstrained split-mapper

I.S.A.A.C.S. Interactive Structure Analysis of Amorphous and Crystalline Systems is a cross-platform software developed to analyze the structural characteristics of three-dimensional models built by computer simulations.

A series of open source files and programs available to use for developing programs to work with the WowWee Robotics RSMedia Robot. These include a USB serial console, a cross-compiler, a firmware dump program, text-to-speech and source code.

BEYE (Binary EYE) is a free, portable, advanced file viewer with built-in editor for binary, hexadecimal and disassembler modes. It contains a highlight AVR/Java/i86-AMD64/ARM-XScale/PPC-64 and other disassembler, full preview of MZ,NE,PE,ELF and other.

Celera Assembler (CA) is a whole-genome shotgun (WGS) assembler for the reconstruction of genomic DNA sequence from WGS sequencing data.

This software provides libraries and command line tools for the processing and analysis of gray scale medical images.

Yorick is an interpreted programming language for scientific simulations or calculations, postprocessing or steering large simulation codes, interactive scientific graphics, and reading, writing, or translating large files of numbers.

AudeLA is a TCL extension aimed at providing amateur astronomers with image processing, telescope controling, ccd camera driving, and various astronomical algorithms. Web site : https://sourceforge.net/p/audela/wiki/fr_accueil Web site : https://sourceforge.net/p/audela/wiki/en_welcome

UPDATE: As of March 2023, the CFDTOOLS project has moved its public repository to NASA's official organization on GitHub: https://www.github.com/nasa/cfdtools While this repository will remain available, it will no longer receive updates or be monitored for issues. Please see the link above for latest releases and issue status. ---- The CFD Utility Software Library (previously known as the Aerodynamics Division Software Library at NASA Ames Research Center) contains nearly 30 libraries of generalized subroutines and close to 100 applications built upon those libraries. These utilities have accumulated during four decades or so of software development in the aerospace field. David Saunders and Robert Kennelly are the primary authors, but miscellaneous contributions by others are gratefully acknowledged.

Simulation of ion beam irradiation

SMALT aligns DNA sequencing reads with genomic reference sequences. It employs hashing combined with dynamic programming.