Schematic circuit editor for VLSI and Mixed mode circuit simulation.
Xschem is a schematic capture program, it allows to create a hierarchical representation of circuits with a top down approach . By focusing on interconnections, hierarchy and properties a complex system (IC) can be described in terms of simpler building blocks. A VHDL, Verilog or Spice netlist can be generated from the drawn schematic, allowing the simulation of the circuit. Key feature of the program is its drawing engine written in C and using directly the Xlib drawing primitives; this gives top speed performance, even on very big circuits. I have succesfully managed to simulate complete VLSI projects with this tool, both digital (Verilog / VHDL) and analog (Spice). The user interface is built with the Tcl-Tk toolkit, tcl is also the extension language used to send commands to the program. Schematics can be printed in SVG, PNG, PDF, formats. XSCHEM runs on Linux or other Unix-likes with Xorg server and on Windows with the Cygwin layer and required tools installed.
Genomecomb is a package for the analysis of complete genome data. It can be used to compare, annotate and especially filter the results of complete genome sequencing.
Tranalyzer flow generator packet analyzer moved to: tranalyzer.com
Download the new version 0.7.1 from https://tranalyzer.com/getit This tool generates extended netflow-like flow statistics from large pcap files or ethernet interfaces. It is intended to serve as a tool for IT troubleshooting, encrypted traffic mining and forensic analysis. A packet based "tshark mode" for detailed header and content inspection is also available. Flow based and packet based content inspection and extraction, better reporting, forensics support and encapsulation support such as ethip, teredo, anything in anything, sctp, etc are new features of the 0.7.1
Wings for NONMEM (wfn) is a set of DOS batch files and awk scripts to make the use of NONMEM more convenient. Simpler NONMEM execution: nmgo runname Extended control stream with user defined names for THETA(), etc. Automatic structured output ...
g03mem takes a Gaussian 03 input file and gives the computational requirements needed for its execution.
A set of tools for simulating semiconductor nanostructures.
This software accompanies the textbook "Quantum Wells, Wires and Dots" (4th Edition), Paul Harrison and Alex Valavanis, Wiley, Chichester (2015). It is adapted (by the same authors) from code that was originally supplied on a CD with the first edition of the book  and is now made available under the GPL3 license. In brief, we encourage everyone to use the software in your studies and research, to study and modify the source-code and to share it widely. However, you are not permitted to include any of our code in a closed-source project.
A cooperative passive radar aimed to be used over commercial (and cheap) hardware.
GDCBOx helps to acquire values in your network from measuring devices and transfers these values to a server. GDCBox is a package distributed für embedded linux systems such as OpenWRT.
Theodore is a tool for semi-automated hybrid assembly of genomes, improving assembly quality by combining multiple information sources.
ATTENTION! Morfologik is now at GitHub: https://github.com/morfologik/
A collection of tools used in the enumeration of solution spaces
This collection of tools forms the basis of a pipeline for the complete enumeration of the number of solutions present in a model that maximizes a single objective function.
AWK language binding for accessing graphics capabilities of GD
SIPeS - Site Identification from Paired-end Sequencing
An SQL handler to interface multiple databases data to the OpeNDAP Hyrax (BES) server. Written in C++, it uses unixODBC to query DB and can be dynamically extended to use proprietary ODBC API driver in many easy ways. It is bundled with scripts to ge
Calculator for (La)TeX Using (La)TeX language (mathematics environment only) for calculations by means of python, bc, maxima, octave or/and similar programs.
The Thot toolkit repository has moved to http://daormar.github.io/thot/ Thot is a toolkit for statistical machine translation. The new Thot toolkit includes fully automatic and interactive machine translation, incremental training of statistical models, parallel estimation, ...
This command-line tool will help people who want to compare 2 csv-like files, and get a detailed report on which rows and fields differ between both files. An awk-based version and Perl Version is currently available.
A pipeline to extract novel cassette exons/retained-introns
ExonFinder provides a pipeline to extract novel cassette exons and novel retained-introns from the results of mapping cross-species ESTs against a target genome via blat.
NIKS (Needle in a K-stack) - detection of mutations in NGS data
To get access to the code, please check it out with svn as described in the code section.
MBDyn_sim_suite is a collection of free pre&post-processing tools and simulation models for the open-source multi-body analysis software MBDyn forming a general purpose simulation environment for structural dynamics with an emphasis on wind turbines.
Download GPS track from the GPS logger "Solmeta Geotagger Pro" under Linux; Auslesen des Geotaggers * Geotag images with image direction, pitch, roll; Geotagging mit Blickrichtung * Altitudes/Höhen from geonames.org * NMEA analysis: DOP, satellite
Clustering project. It allows you to hot plug agent (treating tasks) to a known controller (dispatching tasks on agents according filters). Tasks are submitted by the client. No need to install extra stuff on computers treating tasks, just the agent.
A 3D Model of COSY Juelich Accelerator
AQUA is a suite of programs for Analyzing the QUAlity of biomolecular structures that were determined via NMR spectroscopy. AQUA was developed by Ton Rullmann and Jurgen Doreleijers in the NMR Spectroscopy Department, Utrecht.
Cotool is a collection of routines and tutorials on complexity analysis of time series. Cotool aims to make accessible all the tools of complex system analysis available in the scientific literature to all researchers studying complex phenomena.