Full featured free PACS based on dcm4chee and mysql, with remote web accession available for Linux in Debian packaging format for x86 32 and 64 bit processors. (KEYWORDS: PACS,DICOM,HL7,WORK LIST)
Modelio-Open is a project hosting a set of open source extensions (SoaML, SysML and UML Testing Profile) for a previous version (1.2) of the Modelio Free tool . Currently, the lastest version (2.x) of Modelio modeling and generation tool is available at http://modelio.org/downloads/download-modelio.html. All extensions are downloadable at http://forge.modelio.org/projects.
JEuclid is a complete MathML rendering solution, consisting of: a MathViewer application, command line converters from MathML to other formats, an ant task for autmated conversion, display components for AWT and Swing and a component for Apache Cocoon
Java based astronomical logging software which stores it's data in a free and open XML based format (OpenAstronomyLog).
The Drools.NET is a .NET port for Drools, which is a java Rules Engine based on Charles Forgy's Rete algorithm. Drools.NET enables .NET developers/Users to exploit the powerful Rule Engine like Drools through a completely managed .NET code base.
Add more statistical functions to MySQL.
"Statistics for MySQL" provides additional statistical functions (like Pearson's coefficient of correlation) which are missing in MySQL. DLLs for 32 and 64bit Windows as well as makefiles for Linux are available.
JNA wrapper for VISA DLL and TDS3000 oscilloscope driver using it
Maybe the best way to give a full description is to explain the history of this project. History: This instrument driver project is part of of a non open source data acquisition and analysis project used at Colorado School of Mines, JSeisLab. JSeisLab is a Java port of its predecessor "Spectrum Division for Windows" which is written in VB 6.0. Related open source projects: Java API for GPIB devices. Does not support ethernet devices as of this writing (10. Feb. 2013.) iC: As above. EPICs / javaIOC: Very complex. Uses XML for instrument drivers. Uses remotetea. remotetea: Uses VXI which needs installation of a VXI host for some instruments. It is still a good contender to use in Java apps. Design: I created a 64-bit JNA wrapper with IVI's visa.h version 4.0 as input to JNAerator (code.google.com/p/jnaerator). Instrument drivers written in Java can use this wrapper. A 64-bit VISA DLL needs to be installed from an instrument company (e.g. NI, Tektronix).
GenMAPP is an application designed to visualize genomic data on maps representing biological pathways and other groupings of genes. GenMAPP also includes tools for performing global analysis of genomic data in the context of the Gene Ontology hierarchy.
UDP Packet Generator (Stream generator)
Very basic UDP traffic generator. Works with a packet receiver to control the network status as Bandwidth, RTT, jitter, Loss % etc etc... Set Source Address, Destination address - Port Packet Size Stream Bandwidth And press start Command Line interface available java -jar JPacketGenerator.jar srcAddress srcPort dstAddress dstPort bitRate_bps All parameters are mandatory and with parameters the generator require no GUI or windows manager to work. If The project will be useful I'll post some more detail or helps about the usage.
JMatLink connects Java and MATLAB. Native methods make it possible to use MATLAB's computational engine inside your own java applications.
JTreeMap is a Swing Component which represents a tree structure with rectangles (a TreeMap. See http://www.cs.umd.edu/hcil/treemap/). KTreeMap is the SWT component for treemapping (see http://en.wikipedia.org/wiki/Treemapping). It is an Eclipse plugin.
PRIDE: PRoteomics IDEntifications database. Please note that the PRIDE project has relocated to http://code.google.com/p/ebi-pride
Mobile Web Server is a portable HTTP Server. No Installation Required ! You can use it from any Folder, USB Key (Flash Drive) or CDROM (Read Only).
Tab2MAGE uses a flexible spreadsheet format for MIAME annotation of microarray experiments. Tab2MAGE spreadsheets may be submitted directly to ArrayExpress, or used to generate MAGE-ML for data exchange.
IGLU is a Java class library designed to facilitate sharing of code among Artificial Intelligence/Information Retrieval researchers to illustrate how various problems can be solved in Java. It is developed and maintained by the IGLU Research Group.
NOTE: The IntAct package is now hosted at google code: http://intact.googlecode.com IntAct is an open source package to store and manipulate molecular interaction data.
JMicroPolygon is a project to provide polygon drawing and filling facilities for J2ME (MIDP 1.0 and 2.0) without relying on extension APIs.
Kriterion is a document retrieval and categorization engine capable of full text searching. There is no need for keyword or context-based information.
A medical information system for Windows-based systems (95-XP/CE/PocketPC) based on Open Source platforms
PROSE is a system that performs controlled, systematic, and efficient modification of the code of running Java applications without requiring them to be shut down. PROSE is an infrastructure that supports software adaptation by extending apps at runtime.
R packages supporting parallel computing.
Retic is a free EAI Server written in Jython (Java). It permits to execute adaptors composed of sources, pipes (transformations) and sinks. Connectivity with : JMS,HTTP,SOAP,UDDI,FTP,Xindice,JDBC,Jabber,SMTP... XML Support : XSLT, Xpath. Has GUI for
The Silk project page has been moved to: http://www.assembla.com/spaces/silk/ Silk is a framework for finding semantic links between RDF resources from different datasets. The links are deduced from a set of user-supplied linking heuristics.
Soaplab is a generator of Web Services providing a programmatic access to command-line (and other) applications on remote computers (an example of its usage is available at http://www.ebi.ac.uk/soaplab/)
TRANSFOG DAS (Translational and Functional Onco-Genomics Distributed Annotation System) is an XML-based annotation system to allow the discovery and analysis of candidate genes potentially involved in cancer onset and progression.