Scientific/Engineering Software

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Scientific/Engineering Software

  • Identify and respond to threats before damage is done Identify and respond to threats before damage is done Icon
    Identify and respond to threats before damage is done Icon

    A SIEM that makes it easy to use logs for security, compliance, and troubleshooting.

    SolarWinds® Log & Event Manager (LEM) delivers comprehensive Security Information and Event Management (SIEM) capabilities in a highly affordable, easy-to-use, and quick-to-deploy virtual appliance. LEM provides the visibility, security, and control that IT professionals need to alert on and respond to security threats, and assist in meeting the regulatory compliance guidelines of HIPAA, PCI DSS, SOX, and more. Try it free for 30 days!
  • Multi-vendor storage monitoring simplified Multi-vendor storage monitoring simplified Icon
    Multi-vendor storage monitoring simplified Icon

    Monitor your multi-vendor storage to help ensure your applications get the performance and capacity they need with SolarWinds® Storage Resource Monito

    SolarWinds Storage Resource Monitor (SRM) gives you multi-vendor storage performance monitoring and alerting to help ensure peak storage performance. Automated capacity planning helps you predict storage shortages, reclaim space, and prevent application outages. SRM integrates with other Orion® Platform products to provide end-to-end visibility into the application stack, and lets you easily troubleshoot performance issues from application to storage.
  • Gwyddion Icon

    Gwyddion

    Scanning probe microscopy data visualisation and analysis

    A data visualization and processing tool for scanning probe microscopy (SPM, i.e. AFM, STM, MFM, SNOM/NSOM, ...) and profilometry data, useful also for general image and 2D data analysis.

  • TANGO Control System Icon

    TANGO Control System

    TANGO is a device oriented control system for Linux and Windows. It provides a framework in C++, Java and Python for implementing distributed control objects. TANGO has a full set of tools and hundreds of device servers.

  • PowerTalk

    PowerTalk automatically speaks Microsoft PowerPoint presentations. For presenters who find speaking difficult, audiences containing people with visual impairments and fun educational uses. Uses synthesised computer speech provided with Windows

  • crossmap Icon

    crossmap

    convert genome coordinates betweeen assemblies

    CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies (eg. lift from GRCh36/hg18 to GRCh37/hg19 or vice versa).It support file in BAM, SAM, BED, Wiggle, BigWig, GFF, GTF format.

    Downloads: 121 This Week Last Update: See Project
  • Pysces Icon

    Pysces

    PySCeS is the Python Simulator of Cellular Systems

    PySCeS is the Python Simulator of Cellular Systems. For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time course and steady state, and does a complete control analysis.

  • OpenEV

    A library and reference application for viewing and analysing raster and vector geospatial data.

    Downloads: 40 This Week Last Update: See Project
  • SBW (Systems Biology Workbench) Icon

    SBW (Systems Biology Workbench)

    Framework for Systems Biology

    The Systems Biology Workbench(SBW) is a framework for application intercommunications. It uses a broker-based, distributed, message-passing architecture, supports many languages including Java, C++, Perl & Python, and runs under Linux,OSX & Win32. It comes with a large number of modules, encompassing the whole modeling cycle: creating computational models, simulating and analyzing them, visualizing the information, in order to improve the models. All using community standards, such as SED-ML, SBML and MIRIAM.

  • Advanced Numerical Instruments 2D

    Advanced numerical instruments: adaptive meshing, FE methods, solvers

    Ani2D provides portable libraries for each step in the numerical solution of systems of PDEs with variable tensorial coefficients: (1) unstructured adaptive mesh generation, (2) metric-based mesh adaptation, (3) finite element discretization and interpolation, (4) algebraic solvers.

  • Tucunaré Icon

    Tucunaré

    Distribuição GNU/Linux brasileira, originalmente para telecentros de projetos de inclusão digital, mas que agora conta com instalação para desktop comum. Distro baseada no Debian GNU/Linux. Foi desenvolvida, primeiramente, para facilitar a instalação e configuração do sistema operacional nos telecentros de projetos de inclusão digital. Conta com programas amigáveis, que são adaptados com com as necessidades de uso, no dia a dia em telecentros ou não.

  • Vision Egg

    The Vision Egg produces 2D and 3D visual stimuli on commodity (or workstation) video cards using hardware-accelerated OpenGL. It is built for precise timing, precise color and luminance specification, and real-time control of graphics.

    Downloads: 21 This Week Last Update: See Project
  • relax Icon

    relax

    Molecular dynamics by NMR data analysis

    The software package 'relax' is designed for the study of molecular dynamics through the analysis of experimental NMR data. Organic molecules, proteins, RNA, DNA, sugars, and other biomolecules are all supported. It supports exponential curve fitting for the calculation of the R1 and R2 relaxation rates, calculation of the NOE, reduced spectral density mapping, the Lipari and Szabo model-free analysis, study of domain motions via the N-state model and frame order dynamics theories using anisotropic NMR parameters such as RDCs and PCSs, the investigation of stereochemistry in dynamic ensembles, and the analysis of relaxation dispersion data.

    Downloads: 21 This Week Last Update: See Project
  • reditools

    RNA editing detection by NGS data

    REDItools are python scripts developed with the aim to study RNA editing at genomic scale by next generation sequencing data. RNA editing is a post-transcriptional phenomenon involving the insertion/deletion or substitution of specific bases in precise RNA localizations. In human, RNA editing occurs by deamination of cytosine to uridine (C-to-U) or mostly by the adenosine to inosine (A-to-I) conversion through ADAR enzymes. A-to-I substitutions may have profound functional consequences and have been linked to a variety of human diseases including neurological and neurodegenerative disorders or cancer. Next generation sequencing technologies offer the unique opportunity to investigate in depth RNA editing even though no dedicated software has been released up to now. REDItools are simple python scripts conceived to facilitate the investigation of RNA editing at large-scale and devoted to research groups that would to explore such phenomenon in own data.

  • SCaVis

    Scientific Computation and Visualization Environment

    SCaVis is an environment for scientific computation, data analysis and data visualization for scientists, engineers and students. The program is fully multiplatform (100% Java) and integrated with Java and a number of scripting languages: Jython (Python), Groovy, JRuby, BeanShell. SCaVis can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations. Linear, non-linear and symbolic regression are also available. Elements of symbolic computations using Octave/Matlab scripting are supported. The project was migrated to DataMelt.

  • RTS2 - Remote Telescope System

    Open source observatory control software

    RTS2 is project to create an open source environment for control of a fully autonomous observatory. It is running about dozen fully autonomous observatories. Its modular design allow easily addition of new devices (to already huge supported HW list).

    Downloads: 10 This Week Last Update: See Project
  • PyWordNet

    A Python interface to the Wordnet database of word meanings and lexical relationships. allows the user to type expressions such as N['dog'], hyponyms(N['dog'][0]), and closure(ADJ['red'], SYNONYM) to query the database for lexical relationships.

  • Automatic LaTex Plugin for Vim Icon

    Automatic LaTex Plugin for Vim

    Automatic (La)Tex Plugin is a comprehensive plugin for writing TeX and LaTeX files within vim. Its philosophy is to automate writing so the autor can focus on the article rather than LaTeX related problems. See the wiki page with feature list.

    Downloads: 6 This Week Last Update: See Project
  • Virtual Laboratory Environment Icon

    Virtual Laboratory Environment

    A multi-modeling and simulation environment to study complex systems

    VLE is a multi-modeling and simulation environment to study complex dynamic systems. VLE is based on the discrete event specification DEVS. and it implements the DSDE formalism (A merge of Dynamic Structure DEVS, DSDEVS, with Parallel DEVS, PDEVS). VLE provides a complete set of C++ libraries, called VFL (VLE Foundation Libraries), to develop DEVS models, to gets results of simulations, to launch simulation on cluster. The models can be developed with the DEVS formalism or with the classical mathematical formalism: Ordinary Differential Equation with Euler, Range-Kutta or QSS integrator, Finite state automaton (FDDEVS, UML State chart, Hybrid Petri net). The VLE environment provides an IDE to develop C++ models, DEVS coupled models. VLE have also three ports to use the VFL with Python, Java and R programming languages.

  • Kana no Quiz

    Kana no quiz is a little educational tool to memorize the transcription and pronunciation of Japanese kana (katakana & hiragana), presented as a quiz. It is written in Python and uses a GTK+ interface for a nice cross-paltform rendering!

    Downloads: 5 This Week Last Update: See Project
  • Bika Open Source LIMS/LIS Icon

    Bika Open Source LIMS/LIS

    Lab workflow and web content management. 1-Stop solution

    A web-based LIMS (Laboratory Information Management System) · Built in Plone · Professionally supported · Making waves · bi:ka (Zulu): tell it as it is Installation guides: https://github.com/bikalabs/Bika-LIMS/wiki/Bika-LIMS-Installation More information and links to manuals, user forums, support and translations are available on the front page of the Bika 3 on-line demo at http://demo.bikalabs.com. Bika community: www.bikalabs.org Main project sponsor, Bika Lab Systems: www.bikalabs.com Inquiries: lemoene@bikalabs.org

  • Signal Ranger DSP Linux Support Tools Icon

    Signal Ranger DSP Linux Support Tools

    This project delivers Linux support (USB driver and Tools) for a Digital Signal Processor (DSP) cards of the Signal Ranger series, see http://www.softdb.com/product_dsp.shtml for details) connected to a Linux host via USB.

  • Genesis 2000 Launcher

    A small Python utility used to manage multiple concurrent installations of Genesis 2000.

    Downloads: 3 This Week Last Update: See Project
  • GXSM Icon

    GXSM

    Scanning Probe Microscopy Controller and Data Visualization Software

    GXSM -- Gnome X Scanning Microscopy: A multi-channel image and vector-probe data acquisition and visualization system designed for SPM techniques (STM,AFM..), but also SPA-LEED/LEED/LEEM data analysis. A plug-in interface allows any user add-on data-processing and special hardware and instrument support. Latest: NC-AFM simulation support via math-plugin. Based on several hardware options it supports a commercially available DSP hardware and provided also Open Source Code for all the low level signal processing tasks and instrument controls in a most flexible and adaptable manner. All latest software is available via CVS only or Live Demo/Install CD: http://www.ventiotec.de/linux/GXSM-Linux.iso

  • EASER Icon

    EASER

    Ensembl Easy Sequence Retriever

    Maldonado E, Khan I, Philip S, Vasconcelos V, Antunes A (2013) EASER: Ensembl Easy Sequence Retriever. Evolutionary Bioinformatics, 9:487-490. doi: 10.4137/EBO.S11335.

    Downloads: 2 This Week Last Update: See Project
  • Hermes Utilities

    Hermes -- a set of libraries and tools for the support of scientific simulation and data archival.

    Downloads: 2 This Week Last Update: See Project
  • NICOS Icon

    NICOS

    Client/Server based experiment and instrument control system

    Client/Server based experiment and instrument control system

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