Diffraction Contrast Tomography analysis code
Diffraction contrast tomography code base, as developed by researchers from beamline ID19 of the ESRF, Grenoble, France, and Manchester University, UK.
This script fills in a two dimensional surface with an unbroken, non-overlapping path. The path direction is random, so one can imaging a chess board filled with dominos, with the constraint that the layout of the dominos is complete (board is filled) an
IRBEM-LIB provides routines to compute magnetic coordinates for any location in the Earth's magnetic field, to perform coordinate conversions, to evaluate geophysics/space-physics models, and to propagate orbits in time.
It's a matlab code for my PhD thesis.
Quantum Information Toolkit is a comprehensive, easy-to-use interactive numerical toolkit for quantum information and computing, available for both MATLAB and Python.
This toolkit allows complete control of a microscopy setup from Labview, Matlab, Scilab, Python, .Net, VB, IgorPro, Mathematica and more. Included is a standalone program for image acquisition and scripting control of a scientific microscope.
A collection of different methods for implementing in C++ polycrystalline growth for metals during annealing or recrystallization.
HOT is a package of Matlab and Octave compatible functions that manage thermodynamic data for a wide range of species. Functions calculate almost all the most common thermodynamic quantities of mixtures. Python users may also want to look at PYro at http://pyro.sourceforge.net
Optical ray tracing library based on MATLAB environment Now working on the simple raytracing simulation. Documents are not ready yet. NEW UPDATE : ray generation function, other bug fix and multiple ray treatment
Software for simulating the flight path of high power rockets in six-degree-of-freedom. This software runs with Octave or Matlab and can simulate a wide range of scenarios including parachute recovery and multiple stage flights.
A Matlab code to characterize and analyze Gafchromic film for radiotherapy applications. Single or dual color analysis (respectively for EBT or EBT2 film types). Accurate uncertainty estimations. Requirements: Matlab (min. ver. 2007a), Image toolbox.
SpecMark (spectral Markov) is a method for calculating the joint probability distribution over species in a regulatory network.
Code no longer maintained here, but now transferred to GitHub: https://github.com/peterlu
A package for transient and steady state simulation of organic solar cells.
MSAR-W - a software toolkit for Matlab that does MultiScale AutoRegressive modeling w/ Wavelets. MSAR-W produces multi-scale autoregressive (AR) models. Model orders can be integer, fractional or both. Models can be saved and sent to collaborators
Detect sphere-shaped paramagnetic deposits in MRI datasets
Moved to http://parkermills.github.io/MRI-PDQ/
This project develops simple algorithms to reconstruct a quantum mechanical state via measurements. I will therefore use statistical methods. It is part of my bachelor thesis in theoretical physics.
Compton simulate the interactions betwen a laser beam and an electron beam to create high energy photons (X-rays).
Magnetostatic finite differences simulation tool based on GNU Octave and a Perl/Tk user interface.
software for identifying modules in networks (e.g. "community detection"), as described in "a bayesian approach to network modularity" (physical review letters 100, 258701 (2008); http://link.aps.org/abstract/PRL/v100/e258701).
Herramientas informáticas para auxiliar en el proceso de identificación de parámetros dinámicos en sistemas estructurales. Desde el pre procesamiento hasta la elección y ratificación de modos.
MRI Multiple Echo T2 Analysis
Users load multiecho MRI data and draw ROIs. AnalyzeNNLS creates a T2 distribution from the averaged decay data. Regional fractions and geometric T2 times can be determined. Please reference: Bjarnason TA, Mitchell JR. JMR 206:200-4 (2010). Temporal Phase Correction included in version 2.5. If you use this functionality, please reference: Bjarnason TA, Laule C, Bluman J, Kozlowski P. JMR 232:22-31 (2013).
Dynamics of quantum systems, controlled by external fields
WavePacket is a program package for numerical simulation of quantum-mechanical wavepacket dynamics for distinguishable particles. It can be used to solve one or more (i.e. coupled channels) time-independent or time-dependent (linear) Schrödinger and Liouville-von Neumann-equations. Optionally accounting for the interaction with external electric fields within the semiclassical dipole approximation, WavePacket can simulate modern experiments using ultrashort light pulses in photo-induced physics or chemistry, including optimal control. The extended graphical capabilities allow visualization 'on the fly', including Wigner transforms to phase space. WavePacket is especially suitable for teaching of quantum mechanics as well as for research projects in physics and chemistry, see also http://www.youtube.com/channel/UC1-0XnOHS0cE1H2pjvOsSBA While the Matlab version is already in a stable and mature state, the C++ version is still under construction aiming at an object-oriented rewrite.
PRIN-3D (PRoto-code for Internal ﬂows modeled by Navier-Stokes equations in 3-Dimensions) is a CFD code written in MATLAB, with turbulent and reactive capabilities.