Hamilton Project is a software package concerning science and math in C++
Monte Carlo Simulations of Asymmetric Exclusion Processes
Monte Carlo simulations of various classes of asymmetric exclusion processes (ASEP) with open and periodic boundaries. ASEP is a paradigmatic model of non equilibrium statistical mechanics. It can be utilized to model various non-equilibrium phenomena in Biology such as molecular motor transport and protein synthesis. The code's comments will be gradually expanded upon; if there are mistaken or unclear comments they will be corrected. We cannot give an estimation as to when because this is a side-project of ours, and the comments are not crucial to the code's workings.
Mimotera++ is a light-weigth, portable, easy-to-use C++ API for handling Mimotera files and data. It is released under the LGPL license.