Full featured free PACS based on dcm4chee and mysql, with remote web accession available for Linux in Debian packaging format for x86 32 and 64 bit processors. (KEYWORDS: PACS,DICOM,HL7,WORK LIST)
Flora-2 is a powerful knowledge representation and reasoning system designed for building knowledge-intensive applications. It is based on F-logic, HiLog, Transaction Logic, and also supports defeasible reasoning. Applications include intelligent agents, Semantic Web, ontology management, and more.
JEuclid is a complete MathML rendering solution, consisting of: a MathViewer application, command line converters from MathML to other formats, an ant task for autmated conversion, display components for AWT and Swing and a component for Apache Cocoon
TouchGraph provides a set of interfaces for graph visualization using force-based layout and focus+context techniques. For now only older code is available, but we are planning to release new versions as well.
Portable Ubuntu Linux for Scientific Computing
Released August 22, 2013 Lubuntu Blends: Biochemistry 13.04 (Raring) v5.44 Linux Kernel Image 3.8.0-29 Lubuntu Blends are pre-installed Wubi disk image remixes of Ubuntu and Debian Science meta packages, A custom boot loader allows installations to be copied and automatically booted from most external or USB flash drives. Once up and running, use earlier Lubuntu Remix README instructions here until documentation is updated. https://sourceforge.net/projects/portable-linux/files/ Installation 1. Download the Wubi installer http://releases.ubuntu.com/saucy/wubi.exe 2. Install any flavor of Ubuntu. 3. Swap out the root.disk with the ones provided here. Overview LAMP stack running on localhost (127.0.0.1). Scientific, productivity & media packages include R (Rattle Data Miner), GridEngine, Condor, cooperative computing tools, WINE, LibreOffice, Evolution, Clinica, Neuro Debian Desktop, PsycoPy, OpenVibe, 3DSlicer, Paraview, Openshot. Cheers, Gregory Remington
Java based astronomical logging software which stores it's data in a free and open XML based format (OpenAstronomyLog).
GenMAPP is an application designed to visualize genomic data on maps representing biological pathways and other groupings of genes. GenMAPP also includes tools for performing global analysis of genomic data in the context of the Gene Ontology hierarchy.
UDP Packet Generator (Stream generator)
Very basic UDP traffic generator. Works with a packet receiver to control the network status as Bandwidth, RTT, jitter, Loss % etc etc... Set Source Address, Destination address - Port Packet Size Stream Bandwidth And press start Command Line interface available java -jar JPacketGenerator.jar srcAddress srcPort dstAddress dstPort bitRate_bps All parameters are mandatory and with parameters the generator require no GUI or windows manager to work. If The project will be useful I'll post some more detail or helps about the usage.
Platform for parallel computation in the Amazon cloud, including machine learning ensembles written in R for computational biology and other areas of scientific research. Home to MR-Tandem, a hadoop-enabled fork of X!Tandem peptide search engine.
The Drools.NET is a .NET port for Drools, which is a java Rules Engine based on Charles Forgy's Rete algorithm. Drools.NET enables .NET developers/Users to exploit the powerful Rule Engine like Drools through a completely managed .NET code base.
JTreeMap is a Swing Component which represents a tree structure with rectangles (a TreeMap. See http://www.cs.umd.edu/hcil/treemap/). KTreeMap is the SWT component for treemapping (see http://en.wikipedia.org/wiki/Treemapping). It is an Eclipse plugin.
Jamocha is an open source rule engine. The objective of Jamocha is to provide a high quality rule engine and expert system shell environment. We would provide you an engine, the required development tools and a best practice methodology.
Java wrapper for native VISA library and TDS3000 oscilloscope driver
Write VISA instrument drivers in Java for Windows and Linux. Maybe the best way to give a full description is to explain the history of this project. History: This instrument driver project is part of of a non open source data acquisition and analysis project used at Colorado School of Mines, JSeisLab. JSeisLab is a Java port of its predecessor "Spectrum Division for Windows" which is written in VB 6.0. Design: I created a 64-bit JNA wrapper with IVI's visa.h version 5.0 as input to JNAerator (https://github.com/nativelibs4java/JNAerator). Instrument drivers written in Java can use this wrapper. A 64-bit VISA library from either an instrument company (e.g. National Instruments, Tektronix) when running Windows or libvisa (http://www.librevisa.org) when running Linux needs to be installed .
One of the most accurate multiple protein sequence aligners
MSAProbs is an open-source protein multiple sequence ailgnment algorithm, achieving the stastistically highest alignment accuracy on popular benchmarks: BALIBASE, PREFAB, SABMARK, OXBENCH, compared to ClustalW, MAFFT, MUSCLE, ProbCons and Probalign.
Impression is the flexible and extensible parser of mathematical expressions written in Java. It supports user defined operators, single or multi parameter functions and unlimited number of parameters. It is designed to use with numerical methods.
A configurable knowledge management framework. It works out of the box, but it's meant mainly as a framework to build complex information retrieval and analysis systems. The 3 major components: Crawler, Analyzer and Indexer can also be used separately.
JMatLink connects Java and MATLAB. Native methods make it possible to use MATLAB's computational engine inside your own java applications.
PROSE is a system that performs controlled, systematic, and efficient modification of the code of running Java applications without requiring them to be shut down. PROSE is an infrastructure that supports software adaptation by extending apps at runtime.
Peruser is a open-source lightweight knowledge application framework. Peruser speaks XML and RDF and is implemented in Java. Peruser code runs within Cocoon, as a standalone webapp, as console programs invoked through ant, or as embeddable java code.
Tracking and reporting system for the processing, monitoring, and enforcement of permits issued by the Oklahoma State Department of Environmental Quality. Features web access, CDX gateway for the EPA, and an automatic document assembly system for Word.
Distributed phrase-based machine translation training tool based on Hadoop.
A web-application version of Geotools, providing geotools capabilities in client-side (browser)
A medical information system for Windows-based systems (95-XP/CE/PocketPC) based on Open Source platforms
OpenNetTerminologyManager aims at developing a freely available concept based terminology management system which is fully web based. Target audience: everybody who deals with translation and localisation.
Add more statistical functions to MySQL.
"Statistics for MySQL" provides additional statistical functions (like Pearson's coefficient of correlation) which are missing in MySQL. DLLs for 32 and 64bit Windows as well as makefiles for Linux are available.