NETGEN is an automatic 3d tetrahedral mesh generator
NETGEN is an automatic 3d tetrahedral mesh generator. It accepts input from constructive solid geometry (CSG) or boundary representation (BRep) from STL file format. The connection to a geometry kernel allows the handling of IGES and STEP files. NETGEN contains modules for mesh optimization and hierarchical mesh refinement. Netgen is open source based on the LGPL license. It is available for Unix/Linux and Windows.
Analyze and visualize tours in many variations, which are recorded with a GPS device, bike-, exercise- or ergometer-computer. Some highlights: Tools are available to adjust recorded data, GPS tours can be visualized in customizable maps, ...
NetEmul is a program for simulating computer networks. It makes possible to build, configure networks and verify its availability. This program allows beginners to see a principles of operation CN and gives a scope for experiments.
QSapecNG is a Qt-based symbolic analysis program for linear analog circuits. In fact, it consists of two indipendently parts: the SapecNG framework engine, and the application gui QSapecNG.
Free software for generating understandable and accurate fuzzy systems
GUAJE stands for Generating Understandable and Accurate fuzzy models in a Java Environment. Thus, it is a free software tool (licensed under GPL-v3) with the aim of supporting the design of interpretable and accurate fuzzy systems by means of combining several preexisting open source tools, taking profit from the main advantages of all of them. It is a user-friendly portable tool designed and developed in order to make easier knowledge extraction and representation for fuzzy systems, paying special attention to interpretability issues. GUAJE lets the user define expert variables and rules, but also provide supervised and fully automatic learning capabilities. Both types of knowledge, expert and induced, are integrated under the expert supervision, ensuring interpretability, simplicity and consistency of the knowledge base along the whole process. Notice that, GUAJE is is an upgraded version of the free software called KBCT (Knowledge Base Configuration Tool).
An Interactive Visualisation for Tabular Data
TabuVis is a comprehensive visual analysis tool that provides a flexible, customizable and interactive visualization for tabular (or multidimensional) data. It utilizes scatter-plot visualization approach to provide comprehensive and interactive views for different attribute mappings. It provides single scatter-plot and multiple scatter-plots together with Map (GIS) capability. The project is available at: http://staff.scem.uws.edu.au/~vinh/projects/TabuVis/
molecular editor and viewer
Luscus is the program for graphical display and editing of molecular systems. The program allows fast and easy building and/or editing different molecular structures, up to several thousands of atoms large. Luscus can also visualize dipole moments, normal modes, molecular orbitals, electron densities and electrostatic potentials. In addition, simple geometrical objects can be rendered in order to point out a geometrical feature or a physical quantity. The program is developed as a graphical interface for MOLCAS program package, however it's adaptive nature makes possible using luscus with other computational program packages and chemical formats. If you use this program, please cite: G. Kovačević, V. Veryazov, J. Cheminformatics, 7 (2015) 1-10; DOI: 10.1186/s13321-015-0060-z
RNA editing detection by NGS data
REDItools are python scripts developed with the aim to study RNA editing at genomic scale by next generation sequencing data. RNA editing is a post-transcriptional phenomenon involving the insertion/deletion or substitution of specific bases in precise RNA localizations. In human, RNA editing occurs by deamination of cytosine to uridine (C-to-U) or mostly by the adenosine to inosine (A-to-I) conversion through ADAR enzymes. A-to-I substitutions may have profound functional consequences and have been linked to a variety of human diseases including neurological and neurodegenerative disorders or cancer. Next generation sequencing technologies offer the unique opportunity to investigate in depth RNA editing even though no dedicated software has been released up to now. REDItools are simple python scripts conceived to facilitate the investigation of RNA editing at large-scale and devoted to research groups that would to explore such phenomenon in own data.
OFELI (Object Finite Element LIbrary) is a library of finite element C++ classes for multipurpose development of finite element software. It is intended for teaching, research and industrial developments as well.
NURBS-based elastic and limit analysis of masonry arches in MATLAB
ArchNURBS is a MATLAB tool for the analysis of planar curved structures, with a particular attention to masonry arches. As in CAD softwares, the geometry of the model is defined by a NURBS representation of the structure. Indeed, the user can upload geometries imported from a CAD environment. Based on such a representation, ArchNURBS performs the elastic isogeometric finite element analysis and the collapse limit analysis of the structure. It is possible to include in the analysis the presence of Fiber-Reinforced Polymers (FRP) extrados and intrados strips. A comprehensive descritpion of ArchNURBS is given in "ArchNURBS: NURBS-Based Tool for the Structural Safety Assessment of Masonry Arches in MATLAB", A. Chiozzi, M. Malagu', A. Tralli and A.Cazzani, J. Comput. Civil Eng., 2015. (http://ascelibrary.org/doi/abs/10.1061/%28ASCE%29CP.1943-5487.0000481) ArchNURBS has been developed thanks to a collaboration between the University of Ferrara (Italy) and the University of Cagliar
Pascal Units for Medical Applications
The PUMA Repository is a collection of Pascal units for medical informatics. It contains reusable source code for a wide field of health-care application development. The code includes converting functions for measurement units and an HL7 engine. PUMA is compatible with Lazarus and Free Pascal. Some of the units also support other Pascal implementations including Delphi, winsoft Pocket Studio and other compilers.
amilab is a tool for image processing that includes its own scripting language, and an interface for visualizing 2d/3d images and 3d surfaces. Its main application is medical image processing.
Software developed for the analysis of Neutron Reflectivity data.
Java Api to manipulate simple on data of Matrix Type
Java Api to manipulate simple on data of Matrix Type. There is lot of usefull methods like resize, insert , remove, sort and lot of other methods. Usefull methods to manipulate with diagonals. For example you can create block diagonal matrix. There is lot of usefull methods to manipulate on mathematic matrix also, like determinant , norm , minor , cofactor , solveLienarSystem , arithmetic operations also and lot more.
Structure parameter inference approach for endocrine feedback control
SPINA is software for determining constant structure-parameters of endocrine feedback control systems from hormone levels obtained in vivo. The first version of this cybernetic approach allows for evualuating the functional status of the thyroid gland, i.e. thyroid's secretory capacity (GT or SPINA-GT) and sum activity of peripheral deiodinases (GD or SPINA-GD).
Program for molecular graphics
Charmol is a command-line based program for making high-quality pictures of molecular structures for Linux and MacOS. It produces POV-Ray rendered images or files in VRML format for viewing in 3D. Charmol is capable of making pictures containing: - from small- to large-size molecules - more molecules together (different settings possible) - orbitals using molden and fchk files (GTO functions up to 'h' angular momentum supported) - surfaces using gaussian cube files (also color-mapped surfaces according to potential) - schematic representation of vibrations using arrows - user-defined arrows representing vectorial properties - measuring gauges - combinations of these features (more orbitals together, orbitals and arrows together etc.) Charmol allows for fine tuning of the final molecular design.
Heterogeneous Software Development Accelerated
LAMA is a framework for developing hardware-independent, high performance code for heterogeneous computing systems. It facilitates the development of fast and scalable software that can be deployed on nearly every type of system with a single code base. By using LAMA for their application, software developers benefit from higher productivity and stay up to date with the latest hardware innovations, both leading to shorter time-to-market. The framework supports multiple target platforms within a distributed heterogeneous environment. It offers optimized device code on the backend side, high scalability through latency hiding and asynchronous execution across multiple nodes. LAMA's modular and extensible software design supports the developer on several levels, regardless of whether writing his own portable code with the Heterogeneous Computing Development Kit or using prepared functionality from the Linear Algebra Package, the user always gains high productivity and maximum performance.
The MWDB2 project is a combination of cartographic data, associated programs and Java code. Data includes coastlines, islands, lakes rivers, country and state/province boundaries. Data & code can be used on both Intel and non-Intel based computers.
Modeling and simulation tool for continuous and hybrid systems.
UPDATE: ----------- This repository is no longer maintained, the new version of the QSS Solver is available at: https://github.com/CIFASIS/qss-solver
Satellite Power Analysis Tool
# Satellite Power Analysis Tool (SPAT) The tool was originally created to aid during the Satellite Power System design process, however it has evolved to a Satellite Missoin design tool. The user defines the mission and the Satellite design paramenters and, the tool will output: - Power analysis - Battery charge/discharge analysis - Link budget - Ground track coverage - Ground station visibility SPAT has been developed in MATLAB and MCR (Matlab runtime) is required. SPAT is pre-compiled and currently available for MacOS and Windows email: aitorvs(AT)gmail.com
Calculates Volume, Surface Area & Centroid of a Closed Triangular Mesh
The ObjectVolume program calculates the volume, surface area and centroid of a closed triangular mesh represented in an object file (.obj). The process goes through the list of triangles that make up the surface and, for each triangle, forms a tetrahedron with an external point. The program uses the origin (0,0,0). The volume of the tetrahedron is then calculated. Tetrahedrons with back facing triangles are added and those with forward facing triangles are subtracted yielding the object volume. A detailed description of the process is presented in the ObjectVolumeTutorial.doc document as well as program logic and results. A key component in the program is a subroutine that calculates the volume of a tetrahedron. Four sets of equations were tested and to my surprise all four produced similar results in accuracy and timing.
A simulation program for thyroid homeostasis.
SimThyr is a continuous simulation program for the human pituitary-thyroid feedback control system. Applications of this program cover research, including development of hypotheses, and education of students in biology and medicine, nurses and patients.
Patient record file; includes: patholgogies, vaccines, treatments...
The user friendly captcha is stampcha
STAMPCHA is an alternative solution to user unfriendly CAPTCHA. STAMPCHA is a very user friendly and easy to install software for web sites. STAMPCHA is designed to show a series of images to user and ask a question based on that. only one image is the correct answer.Unlike other CAPTCH software its very easy for the users to respond.Users only need to type the relevant image number in the text box. Since the order of the images and the questions are generated randomly each time user visit the page Its practically impossible for robots to break. You can add your own questions and images which makes it even harder for the robot to break.
LineSort is a plug-in tool that adds advanced sorting capabilities to BBEdit, the Macintosh text editor from Bare Bones Software.