A cross-platform statistical package for econometric analysis
gretl is a cross-platform software package for econometric analysis, written in the C programming language.
Virastyar is an spell checker for Persian Language
Virastyar is a free and open-source (FOSS) spell checker for Persian. It stands upon the shoulders of many free/libre/open-source (FLOSS) libraries developed for Persian text processing. Contributors: Omid Kashefi Azadeh Zamanifar Masoumeh Mashaiekhi Meisam Pourafzal Reza Refaei (former member) Mohammad Hedayati (former member) Kamiar Kanani (former member) Mehrdad Senobari (former member) Sina Iravanin (former member) Mohammad Sadegh Rasooli (former member) Mohsen Hoseinalizadeh (former member) Mitra Nasri (former member) Alireza Dehlaghi (former member) Fatemeh Ahmadi (former member) Banafshe Bakhtiari (former member) Neda Pourmorteza (former member)
The Open Source CFD Toolbox
OpenFOAM - The Open Source CFD Toolbox. OpenFOAM is a generic, programmable software tool for Computational Fluid Dynamics (CFD). For more information, see: - Main Website: https://openfoam.org - C++ Source Documentation: https://cpp.openfoam.org - Issue (Bug) Tracking: https://bugs.openfoam.org - User Guide: https://cfd.direct/openfoam/user-guide
OpenEMR is an open source medical practice management application (EHR EMR PMS) featuring fully integrated electronic health records, scheduling, electronic billing, internationalization, free support, a vibrant community, and a whole lot more.
BWA is a program for aligning sequencing reads against a large reference genome (e.g. human genome). It has two major components, one for read shorter than 150bp and the other for longer reads.
SUMO is a microscopic road traffic simulation.
SUMO is an open source, highly portable, microscopic and continuous road traffic simulation package designed to handle large road networks. It allows for intermodal simulation including pedestrians and comes with a large set of tools for scenario creation. Please note that code and issue tracker are now at https://github.com/DLR-TS/sumo/
A 3D simulator game where you can drive, fly, and sail
Rigs of Rods is a 3D simulator game where you can drive, fly and sail various vehicles using an accurate and unique soft-body physics engine. Since 2014, the development continued at https://github.com/RigsOfRods/rigs-of-rods UPDATE: 10/30/2016: removed opencandy installers, replaced with zip files.
Open Source CAM - Toolpath Generation for 3-Axis CNC machining
GPX viewer and analyzer
GPXSee is a GPS log file viewer and analyzer that supports GPX, TCX, KML, FIT, IGC and NMEA files.
MathMod is a mathematical modeling software
MathMod is a mathematical modeling software that visualize and animate implicit and parametric surfaces. MathMod supports: 3D and 4D plotting and animation, OBJ output file format, Textue and pigmentation support, Noise and Turbulence effects support,Large set of scripted examples. Changelog for MathMod-7.0 (11/02/2018) 1) Add support for complex scripts involving more than 100 functions declarations (previous versions were practically limited to less than 12 functions declarations). 2) Add six new scripts to generate plain-weave and wireframe patterns over any parametric surface (added at the bottom of the parametric models list (Sinus/Catenoid/Knots)_Plain_weave and wireframe_(sinus/shell/knots) ) . 3) Add new function CmpId(n) to return the index of the component under calculation (see "Wireframe_Shell" script). 4) Code cleaning and optimization. For more informations, please visit our bug tracker system on SourceForge: https://sourceforge.net/p/mathmod/tickets/milestone/
High-performance read alignment, quantification and mutation discovery
The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program. Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. Subread and Subjunc were published in the following paper: Yang Liao, Gordon K Smyth and Wei Shi. "The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote", Nucleic Acids Research, 2013, 41(10):e108
The Open-Source Laboratory Information Management System
Open-LIMS (Laboratory Information Management System) is an organism independent project management suite for biological projects. It contains management for projects, samples and their related data.
A graphical Finite State Machine (FSM) designer.
A graphical tool for designing finite state machines and exporting them to Hardware Description Languages, such as VHDL, AHDL, Verilog, or Ragel/SMC files for C, C++, Objective-C, Java, Python, PHP, Perl, Lua code generation.
Subtitle translator from one natural language to other.
Translating subtitles in format SubRip from one natural language to other. It is based on Google Translate without API and therefore without payment. Translator have automatic and manual spell checkers.
Sentinels Application Platform (SNAP)
ESA Sentinel Toolbox for Earth Observation
System dynamics program with additional features for economics
Minsky enables the simulation of models (particularly from economics) defined in terms of coupled ordinary differential equations. The models are defined using a drawing canvas (rather like VisSim), and a double entry bookkeeping system known as a Godley table.
Free Software Medical Suite
FreeMedForms is free and open source medical suite, available for all current platforms (Linux, Mac OS X, Windows and FreeBSD). It is powerful and fully configurable. It can be adapted to many needs: various medical specialties, para-medical specialties and even veterinary profession.
Somatic fusion-genes finder for RNA-seq data
FusionCatcher searches for novel/known somatic fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa and HiSeq) from diseased samples. The aims of FusionCatcher are: - very good detection rate for finding candidate fusion genes, - very easy to use (i.e. no a priori knowledge of databases and bioinformatics is needed in order to run FusionCatcher), - very good detection of challenging fusion genes, like for example IGH fusions, CIC fusions, DUX4 fusions, CRLF2 fusions, TCF3 fusions, etc. - to be as automatic as possible (i.e. the FusionCatcher will choose automatically the best parameters in order to find candidate fusion genes, e.g. finding automatically the adapters, building the exon-exon junctions automatically based on the length of the input reads, etc.) while providing the best possible detection rate for finding fusion genes.
Zoomable user interface (ZUI) with file manager, file viewers and more
Eagle Mode is a zoomable user interface (ZUI) with file manager, file viewers, games, and more. This project is about a futuristic style of human-computer interaction, where the user can visit almost everything simply by zooming in. It features a portable C++ toolkit API for developing such ZUIs, and it features the Eagle Mode application, which provides a virtual cosmos with plugin applications. The most important one is the professional file manager with its rich, scriptable command set. It integrates file viewers for most of the common file types, as well as an audio and video player. Furthermore, the virtual cosmos contains a chess game, a netwalk game, a 3D minesweeper game, a world clock, some fractal fun, and a Linux kernel configurator in form of a kernel patch. Eagle Mode runs best on Linux, but there is also a light version for Windows, which lacks some of the plugins.
console-mode visual binary diff
hexcompare is a curses-based utility to compare and identify differences between two binary files. These differences are then represented visually with an interactive block diagram.
QuteScoop is a platform-independent status indicator for VATSIM. It's available for Windows, Mac and Linux.
Arbitrary-precision CRC calculator and algorithm finder
CRC RevEng is a portable, arbitrary-precision CRC calculator and algorithm finder. It calculates CRCs using any of the 102 preset algorithms, or a user-specified algorithm to any width. It calculates reversed CRCs to give the bit pattern that produces a desired forward CRC. CRC RevEng also reverse-engineers any CRC algorithm from sufficient correctly formatted message-CRC pairs and optional known parameters. It comprises powerful input interpretation options. Compliant with Ross Williams' Rocksoft(tm) model of parametrised CRC algorithms.
ADMS is a code generator that converts electrical compact device models specified in high-level description language into ready-to-compile c code for the API of spice simulators. Repository migrated to: https://github.com/Qucs/ADMS For checkout do: git clone https://github.com/Qucs/ADMS.git
Simple tools for working with gravitational waves
GWtool: simple tools for working with gravitational waves
Mandelbrot family fractal generator
Fraqtive is an open source, multi-platform generator of the Mandelbrot family fractals. It uses very fast algorithms supporting SSE2 and multi-core processors. It generates high quality anti-aliased images and renders 3D scenes using OpenGL. It allows real-time navigation and dynamic generation of the Julia fractal preview.